Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0590 ATGCCCGATCAAGAACGAGATCCAAACATGTATTCATGGCCTCTCTCCgatttcaataataataataatgaccaCCTCCTTCAGTTTCTTGATTTTGACAATATTGATGATGTCGAGCCTATCAAGGAAGGAGAACTAGAAGCAGAAGGTGGtgacggtggtggtggtggtgatggtaaTAACAAGACGACGAGGAGGAGAAACCGAGGAAAGAGGAGTATGATGAGAAGTGCGAGTGGTgatgataataaaaaagatgGTGATGAGTTGGATGATGATGACGGCGATGTGCTTGAGACCCACATATGGACGGAaagagagaggaggaagaagatgaagaacatGTTCACCGACCTTCATGCCTTACTTCCTCACCTTCCTTCCAAGCTTGACAAGGCAACCATTATTGAGGAAGCAGTGAAGTACATACAAAGCCTAGAATCCGAACTCCAAAAGCTTCAAAAACGAAAGGAGGAAAGGCTTCAACTCCAACAAATTCATTCTGCTTCAACCACATTTGACTGTCCCACTTCTCAGTGGCTTCAATTTGCCTATgatcacaacaacaacaataataataattctagcaacaacaataatattaatggCAACAACTTTCTGAGCGCCGCCAACAATACTGAAAACcccattaataatattattggaacttcctctaataataataataatgtgaataattacaataatagCCTTGCATTAGGGTTTCAGACATGGTCTTCTCCAAATGTTGTGTTGAATGCCTGTGGCGATCTAGCTCACTTCTGTGTGTGTTATCCCAAGAAGCTTCGCCTCTACACCACCATCTTCTATGTGCTTGAGAAGTACAAGATCGAGGTTTTGTCTGCTCATATTTCTACTGATCACTCTCGAAAATTCTATATGATTCAAGCACAGATAAATGGAGCTTCAAATGAGTTTATGGATGCAGATTCAATGGTGGAAATATTCAAGCAAGCAGCAGCAGAAATGATGATGCGGCTATCTTGA 1008 0.3442 MPDQERDPNMYSWPLSDFNNNNNDHLLQFLDFDNIDDVEPIKEGELEAEGGDGGGGGDGNNKTTRRRNRGKRSMMRSASGDDNKKDGDELDDDDGDVLETHIWTERERRKKMKNMFTDLHALLPHLPSKLDKATIIEEAVKYIQSLESELQKLQKRKEERLQLQQIHSASTTFDCPTSQWLQFAYDHNNNNNNNSSNNNNINGNNFLSAANNTENPINNIIGTSSNNNNNVNNYNNSLALGFQTWSSPNVVLNACGDLAHFCVCYPKKLRLYTTIFYVLEKYKIEVLSAHISTDHSRKFYMIQAQINGASNEFMDADSMVEIFKQAAAEMMMRLS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0590 335 SMART finulus 104 152 IPR011598 GO:0046983
Sto2g0590 335 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
Sto2g0590 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 146 IPR011598 GO:0046983
Sto2g0590 335 Coils Coil 136 163 - -
Sto2g0590 335 PANTHER TRANSCRIPTION FACTOR BHLH95 62 333 - -
Sto2g0590 335 CDD bHLH_AtbHLH_like 101 154 IPR045239 -
Sto2g0590 335 Gene3D - 92 164 IPR036638 GO:0046983
Sto2g0590 335 MobiDBLite consensus disorder prediction 38 95 - -
Sto2g0590 335 PANTHER - 62 333 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto2g0590 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 159 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0590 Sto-Chr2 4986119 4989977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0590 80 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.403 3.21e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto2g0590 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0590 - - egr:104455378 194.126