Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0589 ATGCCCGATCAAGAACGAGATCCAAACATGTATTCATGGCCTCTCTCCgatttcaataataataataatgaccaCCTCCTTCAGTTTCTTGATTTTGACAATATTGATGATGTCGAGCCTATCAAGGAAGGAGAACTAGAAGCAGAAGGTGGtgacggtggtggtggtggtgatggtaaTAACAAGACGACGAGGAGGAGAAACCGAGGAAAGAGGAGTATGATGAGAAGTGCGAGTGGTgatgataataaaaaagatgGTGATGAGTTGGATGATGATGACGGCGATGTGCTTGAGACCCACATATGGACGGAaagagagaggaggaagaagatgaagaacatGTTCACCGACCTTCATGCCTTACTTCCTCACCTTCCTTCCAAGCTTGACAAGGCAACCATTATTGAGGAAGCAGTGAAGTACATACAAAGCCTAGAATCCGAACTCCAAAAGCTTCAAAAACGAAAGGAGGAAAGGCTTCAACTCCAACAAATTCATTCTGCTTCAACCACATTTGACTGTCCCACTTCTCAGTGGCTTCAATTTGCCTATgatcacaacaacaacaataataataattctagcaacaacaataatattaatggCAACAACTTTCTGAGCGCCGCCAACAATACTGAAAACcccattaataatattattggaacttcctctaataataataataatgtgaataattacaataatagCCTTGCATTAGGGTTTCAGACATGGTCTTCTCCAAATGTTGTGTTGAATGCCGCCAATACTGAAAACgacattaataatattattggaactccctctaataataataataataataatgtgaatTACAATAATAGCCTTGAAGTAGGGTTTCGCACATGGTTTTCTCCAAATGTTGTGCTGAACACTTTGGGTGAAATGGCTCAGTTGTGTGTGTGTTATCCCAAGAATCTTCGCCTCTCCGCCATCATCGCCTATGTGCTTCAGAAGCATAACATTGACGTTTTGTCTCCTTATATTTCTTCTGATCACAATCGAAGATTTTACGTCATTCAAGCACagATAAATGGAGATTCAAATGAGTTTTCGGATAGATATTCAGCGGAGGAAATATTCTTGCGAGCTGCAGAAGAAATTGTAATGTGGATATCTTAA 1143 0.3263 MPDQERDPNMYSWPLSDFNNNNNDHLLQFLDFDNIDDVEPIKEGELEAEGGDGGGGGDGNNKTTRRRNRGKRSMMRSASGDDNKKDGDELDDDDGDVLETHIWTERERRKKMKNMFTDLHALLPHLPSKLDKATIIEEAVKYIQSLESELQKLQKRKEERLQLQQIHSASTTFDCPTSQWLQFAYDHNNNNNNNSSNNNNINGNNFLSAANNTENPINNIIGTSSNNNNNVNNYNNSLALGFQTWSSPNVVLNAANTENDINNIIGTPSNNNNNNNVNYNNSLEVGFRTWFSPNVVLNTLGEMAQLCVCYPKNLRLSAIIAYVLQKHNIDVLSPYISSDHNRRFYVIQAQINGDSNEFSDRYSAEEIFLRAAEEIVMWIS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0589 380 SMART finulus 104 152 IPR011598 GO:0046983
Sto2g0589 380 PANTHER - 269 378 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto2g0589 380 PANTHER - 62 262 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto2g0589 380 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
Sto2g0589 380 PANTHER TRANSCRIPTION FACTOR BHLH95 269 378 - -
Sto2g0589 380 PANTHER TRANSCRIPTION FACTOR BHLH95 62 262 - -
Sto2g0589 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 146 IPR011598 GO:0046983
Sto2g0589 380 Coils Coil 136 163 - -
Sto2g0589 380 Gene3D - 92 164 IPR036638 GO:0046983
Sto2g0589 380 CDD bHLH_AtbHLH_like 101 154 IPR045239 -
Sto2g0589 380 MobiDBLite consensus disorder prediction 38 95 - -
Sto2g0589 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 159 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0589 Sto-Chr2 4978981 4982494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0589 80 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 30.195 3.05e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto2g0589 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0589 - - mcha:111007871 160.614