Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0587 atgtCTAATCAAGAACAAGATCCAAACATGACTCCATGGCCTCTCTTCGATTTCGATGATGACACCTTGCAGAAATCCGGCATCAACCCTAATTGTTccaataataatgaaattattgatagtGACTCCTTCCTTCAACTTCTTGATTTTGACAATATTATCGATGATGTCGATCCAATCAAGGAAGGAGAGCCAGAGGCAaaaggtggtggtggtggtggtggtggtggtgacagCACGACCACAACTACGAGGAGAAGCCGAGGAAAGAGGAGTATGAGTAGTGCAAGTGGGAATGAAGAAGCTGGGAATAAGAAGATGAAGTTTGTTAATAAAGAaggtggtgatgatgatgatgtgcatGAAATTCACATATTgactgagagagagagaaggaagaagatgaagaactATTTTACTGAACTTCATGCTTTGGTTCCTCACCTTCCTTCCAAGGTTGACAAAGCAACCATTCTTGAGGAAGCAGTGAAGTACATAAAAAATAAGGAATCCGAACTCCAAAAGCTTGAAAAACGAAAGGAGGAAAGGCTTCAACTCCAACAAATTCAATCTGCTTCAACCACACTTGAGTCTCCCACTTCTCAGTGGCTTCAATATCCCTATGatcacaacaataataatattaatggcaACAACTTTGTGACCGCCGCCAATACTGAAAACgccattaataatattattggaacttcctctaataataataataataataatgtgaatTACAATAATAGCCTTGCAGTAGGATTTCACACATGGTCTTATCCAAATGTTGTGCTGAACACATTTGGTGAAATGGCTCAGTTCTGTGTGTGTTATCCCAAGAACCTTCGCCTCTACACCACCATCGCCTATGTGCTTGACAAGTACAAGATCGAGGTTTTGTCTGCTCATATTTCTTCTGATCACTATCAAAGATTTTTCATGATTCAAGCACagATAAATGGTGGAACAAATCAGTTTTCGGATGGATATTCAGTGGGGGAAATATTCAAGCAAGCAGCAGAAGAAATTGCAATGTGGACATCTTAA 1050 0.3276 MSNQEQDPNMTPWPLFDFDDDTLQKSGINPNCSNNNEIIDSDSFLQLLDFDNIIDDVDPIKEGEPEAKGGGGGGGGGDSTTTTTRRSRGKRSMSSASGNEEAGNKKMKFVNKEGGDDDDVHEIHILTERERRKKMKNYFTELHALVPHLPSKVDKATILEEAVKYIKNKESELQKLEKRKEERLQLQQIQSASTTLESPTSQWLQYPYDHNNNNINGNNFVTAANTENAINNIIGTSSNNNNNNNVNYNNSLAVGFHTWSYPNVVLNTFGEMAQFCVCYPKNLRLYTTIAYVLDKYKIEVLSAHISSDHYQRFFMIQAQINGGTNQFSDGYSVGEIFKQAAEEIAMWTS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0587 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 182 IPR036638 GO:0046983
Sto2g0587 349 Coils Coil 159 186 - -
Sto2g0587 349 MobiDBLite consensus disorder prediction 1 35 - -
Sto2g0587 349 PANTHER - 88 347 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto2g0587 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 169 IPR011598 GO:0046983
Sto2g0587 349 Gene3D - 114 198 IPR036638 GO:0046983
Sto2g0587 349 CDD bHLH_AtbHLH_like 124 177 IPR045239 -
Sto2g0587 349 SMART finulus 125 175 IPR011598 GO:0046983
Sto2g0587 349 Pfam Helix-loop-helix DNA-binding domain 124 168 IPR011598 GO:0046983
Sto2g0587 349 PANTHER TRANSCRIPTION FACTOR BHLH95 88 347 - -
Sto2g0587 349 MobiDBLite consensus disorder prediction 57 115 - -
Sto2g0587 349 MobiDBLite consensus disorder prediction 76 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0587 Sto-Chr2 4966191 4970851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0587 103 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.704 1.85e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto2g0587 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0587 - - vvi:100264010 174.481