Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0522 ATGGATGCTTCCTCAGATCAAATGAGTAGTGAAACCAGAACATTAACATGCCATAATCAAAATACCTCAGAACAACTGCATACACTTGATCCCAGAACTGCCCATTTTGAGTTGTCAGAAAAAGCTAACCAGATTGGTTCTGAATTTTTGGATAATGAACAAAGGATCCTTAGCATTGGGAAAACAAGCTCTGTTATTGATGAAAAATCACCTATAGTTTCTGACAGTATGACTGGGAATTCTGTCATTCTACTGCCCGCACGACCTCAAAGTGACTTACACAAGAGTTGTCAGATTGGAGATGGTTCATGCCTTCAACATGGTACCTTAGTACAGGCCGATGCTATCAGCATGGATGCTTCCTCAGACCAAATGGGTAGTGATACCAAAGAGTTAACATGCCATAACCAAAATTCCTCAGAAAAGCTGCATACGATTGATCTTGGAACTGCACATTTTGAATTGTCAGAAAAAACTAATCAGGTTGGCTCTGAGTTTGTGGACAATGAGCAAAGGGCACTTGGGACTGGGGAAACCTGCTCTTTTGTTGATGAAAAATCACCTAAAGTTTCTGACACTGTGATTGGGAATTCTGTCATTAAACTTCCTGCACAACCTCAGTGTGACTTGGATGAGAGTTGTCAGGCTGGAGAAGGCTCATGCCTTCAATCAGAAAGAAGTGATGATCAGGATGAACCTGTAGAAAGTAGTGATACAAACGAACAATCAGATCCACCTTACGAAGATATTGCCGAAGGTACTAGTTCTGATTATTTGGAGAGAAACACTAAAAGGGCAACTCATGTTCGGCTGGGAAACAAGGATAAAAAAACTCCAAAATCATTGAAGAAGAAATATGTTCTAAGATCATTAGGAAGTAGTGACAGAGTTTTGCGGTCAAGGACACAAGAAAAGGCTAAACCACCTGAGTTGAATACTAATTTGGTTAATGTTGATAATGACGGAAAGAAGAcaagaggaaggaagaagaaagataaGGGAAGAGGAGAGGGAGTGACTGATGAATTCTCAAGAATCAGAGCTCGTCTACGATATTTTTTGAAGCGAGTGAGCTATGAGCAAAACTTGATTGATGCTTATTCTGGTGAGGGATGGAAAGGATATAGCATGGAAAAATTAAAGCCCGAGAAGGAGCTTCAACGTGCAAAGTCTGAAATACTTCAACTTAAATTGAAAATTAGGGATCTGTTTCGACAGTTGGATATATTGTGTGCTGAAGGGAGGCTTCCAGAATCTTTGTTTGATTCTGAAGGAGAGATTAGCAGTGAGGATATATTCTGTGCTAAATGCAGGTCCAAAGACTTGACCACTGGTAATGATATAATACTTTGTGATGGTGCTTGTGACCGTGGATTTCATCAGTTCTGTTTGGAACCTCCTTTGTTGACTGAAAACATTCCAGCTGATGATGAGGGTTGGCTATGCCCAGGATGTGATTGCAAAGATGACTGCTTTGATATTCTTAATGACTCTTTAGGAACAAAACTCACTATTAGCGATGCCTGGGAGAGGGTTTTTCCTGAAGCAGCTGCAGCTGCTGGAAATAAAGTGGATAACAACTTGGGACTTCCATCAGATGATTCCGATGATGATGATTATAATCCTGATGTTAAAGAAGATGAGGAGGTTGAAGAAGGCAAATCAAGTTCTGATGAATCTGAGAACTCTTCTGCTTCTGAGGAAAAGGATGCTTCACGCAATGAGGATCCGTACTTAGGCCTTCCTTCTGAAGATTCAGAGGACAATGATTATGATCCTAATGTTACAGCTCACGACAAGGATGTCGCTGAAGAAAGTTCAAGCTCTGATTTCACATCTGATTCTGAGGATCTTGGTGATGTAATTAAGGGTAACACATTCTCTGGACAGGATAATGATCCCTTATCTGCATCATCTTCACTCCAGCTAGATTCTGGCCAAGAAGCTTGCTCTCCTGTTTCTGGGAAAAGACAAATTGAAAGTCTTCCTTTCTCATATGAAGTAGATGTGACTCTCAAACTGTTGTACAGTTTGCCTGCATGCTTGTATGAACTTGCAGGAGAGACATACCAAAATGCGGATTCTGATACTAGTGACGATGAAGATTGGACTGCCACTGATACCTCaagtagaaaaaagaaatttgctGGCAAAAGGGCTCCAGTGTCACCAAATGGGAAAGCCTCAATATTGGACCATGTGCAGAAAGAAACTGCACATACTCCTCGAACAGACACTCGTCGGAATAGAGTTGAAAATACAGATAATTCACCTACTGAATCATTTGAAGGCTCCAAGAGTGCTGGTTCAAATGATAAAAAAGCTAGCTCTTCAACTTACAAAAGACTTGGGGATGATGCAGTTAAGGTACTATACAAAAACTTCAAAGAAAATCAGTATCCAGACCGAGCCAAAAAAGAAAGCTTGGCACGAGAAGTTGGACTTACTTTCCGACAGGTTAGCAAATGGTTTGAGAATGCTCGGCATTCGTTACGTGTGGAAGCCAGTGCAGGTAAAAAAACTTCTCAGCAAGCCACCTCCAGCGAAGTTGAAAATGAGGGAGCATTTGGTAATGACGAGAGGGACTCCAAATTGGCGACTGACGAGGGTAATGTACAAACCCCGAGTTCTGGAAAGAGGAAGCTTAAGCCTGATCCCCAGGAATCTGATACAAATATGGACATTGATAGTGCAGCAAAAATTCCTGGTTCTGACTCACCTAGAATTAGTGAAGTGCAAAGAAGCCACAAAAAGAAGACAAGGAAAAGGAAATGA 2775 0.4061 MDASSDQMSSETRTLTCHNQNTSEQLHTLDPRTAHFELSEKANQIGSEFLDNEQRILSIGKTSSVIDEKSPIVSDSMTGNSVILLPARPQSDLHKSCQIGDGSCLQHGTLVQADAISMDASSDQMGSDTKELTCHNQNSSEKLHTIDLGTAHFELSEKTNQVGSEFVDNEQRALGTGETCSFVDEKSPKVSDTVIGNSVIKLPAQPQCDLDESCQAGEGSCLQSERSDDQDEPVESSDTNEQSDPPYEDIAEGTSSDYLERNTKRATHVRLGNKDKKTPKSLKKKYVLRSLGSSDRVLRSRTQEKAKPPELNTNLVNVDNDGKKTRGRKKKDKGRGEGVTDEFSRIRARLRYFLKRVSYEQNLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILQLKLKIRDLFRQLDILCAEGRLPESLFDSEGEISSEDIFCAKCRSKDLTTGNDIILCDGACDRGFHQFCLEPPLLTENIPADDEGWLCPGCDCKDDCFDILNDSLGTKLTISDAWERVFPEAAAAAGNKVDNNLGLPSDDSDDDDYNPDVKEDEEVEEGKSSSDESENSSASEEKDASRNEDPYLGLPSEDSEDNDYDPNVTAHDKDVAEESSSSDFTSDSEDLGDVIKGNTFSGQDNDPLSASSSLQLDSGQEACSPVSGKRQIESLPFSYEVDVTLKLLYSLPACLYELAGETYQNADSDTSDDEDWTATDTSSRKKKFAGKRAPVSPNGKASILDHVQKETAHTPRTDTRRNRVENTDNSPTESFEGSKSAGSNDKKASSSTYKRLGDDAVKVLYKNFKENQYPDRAKKESLAREVGLTFRQVSKWFENARHSLRVEASAGKKTSQQATSSEVENEGAFGNDERDSKLATDEGNVQTPSSGKRKLKPDPQESDTNMDIDSAAKIPGSDSPRISEVQRSHKKKTRKRK 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0522 924 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 236 883 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 523 658 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 625 654 - -
Sto2g0522 924 ProSiteProfiles 'Homeobox' domain profile. 774 834 IPR001356 GO:0003677
Sto2g0522 924 Coils Coil 386 406 - -
Sto2g0522 924 SMART HOX_1 776 838 IPR001356 GO:0003677
Sto2g0522 924 CDD PHD_PRHA_like 433 485 IPR045876 -
Sto2g0522 924 MobiDBLite consensus disorder prediction 321 338 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 836 853 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 547 575 - -
Sto2g0522 924 Pfam PHD-finger 433 488 IPR019787 -
Sto2g0522 924 MobiDBLite consensus disorder prediction 733 754 - -
Sto2g0522 924 SMART PHD_3 433 486 IPR001965 -
Sto2g0522 924 MobiDBLite consensus disorder prediction 254 276 - -
Sto2g0522 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 490 IPR013083 -
Sto2g0522 924 PANTHER HOMEOBOX PROTEIN HAT3.1 236 883 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 591 607 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 832 924 - -
Sto2g0522 924 SUPERFAMILY Homeodomain-like 778 833 IPR009057 -
Sto2g0522 924 ProSiteProfiles Zinc finger PHD-type profile. 431 488 IPR019787 -
Sto2g0522 924 ProSitePatterns Zinc finger PHD-type signature. 434 485 IPR019786 -
Sto2g0522 924 MobiDBLite consensus disorder prediction 531 546 - -
Sto2g0522 924 CDD homeodomain 782 832 IPR001356 GO:0003677
Sto2g0522 924 MobiDBLite consensus disorder prediction 1 24 - -
Sto2g0522 924 SUPERFAMILY FYVE/PHD zinc finger 423 491 IPR011011 -
Sto2g0522 924 MobiDBLite consensus disorder prediction 690 783 - -
Sto2g0522 924 ProSitePatterns 'Homeobox' domain signature. 809 832 IPR017970 GO:0000981|GO:0006355
Sto2g0522 924 MobiDBLite consensus disorder prediction 211 286 - -
Sto2g0522 924 Gene3D - 775 849 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 312 338 - -
Sto2g0522 924 MobiDBLite consensus disorder prediction 755 777 - -
Sto2g0522 924 Pfam Homeodomain 785 829 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0522 Sto-Chr2 4498817 4503672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0522 301 831 Homeobox Transcription Factor Family AT3G19510 45.518 1.38e-119 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Sto2g0522 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0522 - - lja:Lj5g3v2112070.1 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0522 2 4498817 4503672 Sto2g0522 2 4498817 4503672 ECH