Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0506 ATGACATCTGTCGTCCCGCCGCCGGCGCCCGGCCGAGAACTCTCCAACCCTCCGTCCGACGGCATCTCGAATCTTCGCTTCTCCAACCATAGTGATCATTTGCTTGTCTCCTCATGGGATAAGAGTGTGCGGTTGTATGATGCGAGCGCCAATGTGCTCAGAGGAGAGTTCATGCACGGTGGACCTGTGCTTGACTGTTGCTTCCACGACGATTCTTCGGGATTTAGTGCCGGCGCCGACAATACAGTGAGGCGGCTTGTTTTCAGCTCTAATAAGGAGGATATTCTGGGAAGGCATGATGCACCTGTTCGTTGTGTTGAGTACTCCTATGCAGCAGGGCAATTGATTACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCTAGTGGGCAAGAGCGCACTCTTGTTGGGACATATCCACAACCTGAGCGTGtgtactctctttctcttgTTGGGAATCATCTTGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGATTTGAGGAATATGTCTCAACCGGAGCAACGAAGGGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGGTATGCACTTAGTTCAGTTGAAGGGAGGGTTGCAATGGAATTTTTTGATCTCTCTGAGCCTAGCCAAGCAAAAAAATATGCTTTTAAGTGTCACAGAAAATCAGAAGCTGGAAGGGACATTGTCTATCCCGTAAATGCTATTGCATTCCACCCCATATATGGTACATTTGCCACGGGAGGTTGTGATGGTTTTGTAAATGTATGGGATGGAAACAACAAAAAGAGGCTATACCagTACTCAAAATATCCATCTAGCATTGCTGCACTTTCATTTAGCAGAGATGGACGCCTCCTGGCTGTTGCTTCAAGTTACACATTTGAAGAGGGGCCCAAACATCATGAACCAGATGCAATCTACGTGCGCAGTGTGAATGAGATAGAGGTGAAGCCAAAACCCAAAGTCTATCCAAATCCTCAAGCGTGA 1029 0.4616 MTSVVPPPAPGRELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAGADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNHLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEPSQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSIAALSFSRDGRLLAVASSYTFEEGPKHHEPDAIYVRSVNEIEVKPKPKVYPNPQA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0506 342 PANTHER MRNA EXPORT FACTOR AND BUB3 8 337 - -
Sto2g0506 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Sto2g0506 342 MobiDBLite consensus disorder prediction 1 20 - -
Sto2g0506 342 SMART WD40_4 274 324 IPR001680 GO:0005515
Sto2g0506 342 SMART WD40_4 89 128 IPR001680 GO:0005515
Sto2g0506 342 SMART WD40_4 7 47 IPR001680 GO:0005515
Sto2g0506 342 SMART WD40_4 223 271 IPR001680 GO:0005515
Sto2g0506 342 SMART WD40_4 50 87 IPR001680 GO:0005515
Sto2g0506 342 SMART WD40_4 136 172 IPR001680 GO:0005515
Sto2g0506 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Sto2g0506 342 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 8 337 - -
Sto2g0506 342 SUPERFAMILY WD40 repeat-like 17 305 IPR036322 GO:0005515
Sto2g0506 342 Gene3D - 9 336 IPR015943 GO:0005515
Sto2g0506 342 Pfam WD domain, G-beta repeat 230 271 IPR001680 GO:0005515
Sto2g0506 342 Pfam WD domain, G-beta repeat 20 47 IPR001680 GO:0005515
Sto2g0506 342 Pfam WD domain, G-beta repeat 96 128 IPR001680 GO:0005515
Sto2g0506 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 280 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0506 Sto-Chr2 4349266 4353128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0506 96 304 U-box Gene Family AT2G33340 24.883 3.67e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0506 K02180 - tcc:18608077 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0506 2 4349266 4353128 Sto2g0506 2 4349266 4353128 ECH