Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0505 ATGGAGAGTAATGAGGGTGCTTCAGTAATCAAGATTGCTTCGAGAGTTTTCCTTGTGTCCCATTCAGATAAGCCCCTGGTCAGCTTATATAGTGCCCAGATATGGCCTCCCAAAAGTGTGAAAGATTCAGGATCTCGTCTTCATTCCAAGTTGAAGGAAGCTATTATGCAGACTGGTATGGAAAAGAATCTTTTTGGAAATCACCCTGTTTCATTGCCAACTACAGAATCTCGCAGTCCTCCTCCAGCATTTGCTTCAGATCCATTGATTGGTAGGGAAAATAATGAAATCTCAGATTCGATGGAAGGATACTCATCTCCAACTGGAATAAGACCTTCCAAACTTTCAGTGACAGATATTGTGGAAATAGACAGTCCCAATTCAGCAGGAAATTTTATTAAAGCCCCAAGTCCTGCTCCTCCTGGTGCTACAACTAGGAAGAGTTCACTCCATGGTGACCGGCAAAATTCTGAAATCTCATATTATGCTGATGACGAAGATGGTGATCATAAAAAGTATACAAGAAGAGACTCGCGCAACGGGGCCCCGGTGAAGATTTCCCTAAAGATGAGTAAAGGTGTTGTTCATCATCATAGCAATGAACAGTCTAGTGTGCAGATGATGAATGAAGCCATTGATGAAGATGAATCAGTGAAGGAGGTTGTTTCTGAACCAGAAAGAGAGGTTAAAAGATCTAGGAGCTCAATAGAGATGCCAAAGAATAAGAGGAATGTGAAGTCCAAGAAGAATTCAAATTCTTCTTCTTGTAGCAGCTATTGCTCATCTGAGGATGATTCAAGTGCTTCTCAAGAGGCAATTCATGGAGGATCATCTTCTTGTTTGAGCCCTCAAAACAACAACACAACTCTCAAATCAAATGGAAAATCTAGATCTAACAGAGGTCCTGCCACTGATCCTCAAAGTGTTTATGCAAGAagaagaagagaaagaataaaTGAAAGGTTGAGAATTTTACAAAATCTTGTCCCCAATGGAACAAAGGTGGATATCAGCACTATGCTTGAAGAAGCTGTGCAATATGTGAAGTTTTTACAGCTACAAATAAAGCTTCTGAGTTCTGATGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGATTAGACCTCAATATCACACCAACCAAACAACCCTAG 1167 0.3993 MESNEGASVIKIASRVFLVSHSDKPLVSLYSAQIWPPKSVKDSGSRLHSKLKEAIMQTGMEKNLFGNHPVSLPTTESRSPPPAFASDPLIGRENNEISDSMEGYSSPTGIRPSKLSVTDIVEIDSPNSAGNFIKAPSPAPPGATTRKSSLHGDRQNSEISYYADDEDGDHKKYTRRDSRNGAPVKISLKMSKGVVHHHSNEQSSVQMMNEAIDEDESVKEVVSEPEREVKRSRSSIEMPKNKRNVKSKKNSNSSSCSSYCSSEDDSSASQEAIHGGSSSCLSPQNNNTTLKSNGKSRSNRGPATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGMNIGLDLNITPTKQP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0505 388 MobiDBLite consensus disorder prediction 248 305 - -
Sto2g0505 388 MobiDBLite consensus disorder prediction 127 182 - -
Sto2g0505 388 PANTHER TRANSCRIPTION FACTOR BHLH54 152 384 - -
Sto2g0505 388 Pfam Helix-loop-helix DNA-binding domain 312 352 IPR011598 GO:0046983
Sto2g0505 388 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 152 384 - -
Sto2g0505 388 MobiDBLite consensus disorder prediction 212 244 - -
Sto2g0505 388 Gene3D - 306 367 IPR036638 GO:0046983
Sto2g0505 388 MobiDBLite consensus disorder prediction 211 313 - -
Sto2g0505 388 MobiDBLite consensus disorder prediction 158 179 - -
Sto2g0505 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Sto2g0505 388 SMART finulus 308 357 IPR011598 GO:0046983
Sto2g0505 388 MobiDBLite consensus disorder prediction 72 112 - -
Sto2g0505 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 368 IPR036638 GO:0046983
Sto2g0505 388 MobiDBLite consensus disorder prediction 98 112 - -
Sto2g0505 388 MobiDBLite consensus disorder prediction 142 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0505 Sto-Chr2 4332291 4347848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0505 230 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 57.407 4.45e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto2g0505 HLH 9.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0505 - - gmx:100775639 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0505 2 4332291 4347848 Sto2g0505 2 4332291 4347848 ECH