Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0493 ATGGCTAGTTTTGCAGGAACCACACAGAAGTGCACGGTTTGCGAGAAAACCGCCTACCCCGTCGATAAGCTAACTGCCGACGGCCGTGTCTATCACAAGGCTTGCTTCCGGTGCCACCATTGCCGGAATACCcttaagCTAAGTAATTACTGTTCTTTTGAGGGGGTGCTCTATTGCAGACCCCATTATGATCAACTCTACAAGAGAACTGGAAGCCTGGATAAGAGCTTTGaagGAACACCCAAGATTCAGAAACCAGAGAGACCAACTGAGAATGAGAATGCTAAGGTTCTCTCAAATGTGTTCATGGGCACCAAAGACAAATGTGCAGGTTGCAAAAAGACAGTTTATCCTCTTGAGAGGgttaCAGTGAATGGGACTCCCTACCACAAAGGGTGCTTCAAGTGTAGCCATGGAGGTTGTACCATAAGTGCAGTAAACTTCATTACACATGAGGGAAAGCTGTATTGCAAGCACCATCACATTCAGCTCTTCAAAGAGAAGGGAAACTACAGCCAGCTTGATGGTGACAGAGAAAAGACACCTAGTCTCACTGATGAAACCTCTTCTTTCAAAGTTGGTGCTTAA 588 0.4524 MASFAGTTQKCTVCEKTAYPVDKLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPERPTENENAKVLSNVFMGTKDKCAGCKKTVYPLERVTVNGTPYHKGCFKCSHGGCTISAVNFITHEGKLYCKHHHIQLFKEKGNYSQLDGDREKTPSLTDETSSFKVGA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0493 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Sto2g0493 195 Pfam LIM domain 109 164 IPR001781 -
Sto2g0493 195 Pfam LIM domain 11 65 IPR001781 -
Sto2g0493 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Sto2g0493 195 SMART lim_4 10 62 IPR001781 -
Sto2g0493 195 SMART lim_4 108 160 IPR001781 -
Sto2g0493 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Sto2g0493 195 Gene3D Cysteine Rich Protein 5 75 - -
Sto2g0493 195 Gene3D Cysteine Rich Protein 103 173 - -
Sto2g0493 195 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 186 - -
Sto2g0493 195 PANTHER OS06G0237300 PROTEIN 1 186 IPR045268 GO:0051015
Sto2g0493 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Sto2g0493 195 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Sto2g0493 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Sto2g0493 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Sto2g0493 195 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0493 Sto-Chr2 4263867 4266077 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sto2g0493 LIM 4.2e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0493 K09377 - mnt:21388538 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0493 2 4263867 4266077 Sto2g0493 2 4263867 4266077 ECH