Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0490 ATGTCTCCCTCGCCGGACCACCCTTCCGCCGCCTGTTCTAACTTGTTATGCCATGAGGATGCCAGTGAAGTCATCTCCGGcgaccttccttcttcttcttcttcgtcttcgtcGTCTCTGCCGCCGTATTCTCCGCCGTCCGACGACGCGACCGTCGGACGACTCATCGACGTGGAGACGCAACACATGCCGGACTCTGATTACGCGCGGCGCTGCCGTCACCGCTTAATCGACGTCACCGCTCGCCATGACTCCATTAACTGGATCTTGAAGGTTCACGCGTATTATCGGTTTCGTCCAGTAACGGCGTTCCTCTCCGTCAACTACCTCGATCGATTcctctcttgctctactcttcCGCAGCAATCGAGTAGGTGGCCGTTTCAACTCCTCTCGGTGGCTTGCTTGTCTCTAGCGGCGAAAATGGAGGAGCCAGAAGTGCCTCTGTTGCTAGAACTCCAATTGTTCGAGCCTAGATTCTTCTTCGATCCCAAATCGATTCAGAGAATGGAGCTCTGCGTCATGGCCAAACTCCGTTGGAGATTACGCTCCGTCACGCCTTTCGATTACCTCCACCACTTCATCTCGAAGCTCCCTTCGTCGTCGACCCGGAAACCCGAATCCGTTACCGCAGCATTATTATCTTCTTCCTCCGACCTCATTATCAGCTCCATTCGTGGGATTGATTTCTTGGGTTTTGCGCCGTCGACGATGGCAGCAGCCGCCGTGCTCTGTTCTGCTGGCCAGAGCCAATCGCCGCCGTGCTTTCATGATAGAGTAAACAAAGAAATGGTGAGAAGCTGTCACCAACTAATGGAAGAATATCTGGTGGACACGTGTCCTTCAGCTAGCAATAAATCCCTTAGAGCCGAGCCTGCGCCGCCTTCGAGCCCAATCGGCGTGCTCGACGCTGCGACTACTTGTGTGAGCTGCGACACTCGCTCCGAGAACCCAGGATCAAGCCGCGAAGCCGAGCCACCAAGCAAAAGGCTGCGATCCTCTACTCCTGATGTGCAATAG 1020 0.5225 MSPSPDHPSAACSNLLCHEDASEVISGDLPSSSSSSSSSLPPYSPPSDDATVGRLIDVETQHMPDSDYARRCRHRLIDVTARHDSINWILKVHAYYRFRPVTAFLSVNYLDRFLSCSTLPQQSSRWPFQLLSVACLSLAAKMEEPEVPLLLELQLFEPRFFFDPKSIQRMELCVMAKLRWRLRSVTPFDYLHHFISKLPSSSTRKPESVTAALLSSSSDLIISSIRGIDFLGFAPSTMAAAAVLCSAGQSQSPPCFHDRVNKEMVRSCHQLMEEYLVDTCPSASNKSLRAEPAPPSSPIGVLDAATTCVSCDTRSENPGSSREAEPPSKRLRSSTPDVQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0490 339 SMART cyclin_7 87 176 IPR013763 -
Sto2g0490 339 Gene3D - 55 252 - -
Sto2g0490 339 MobiDBLite consensus disorder prediction 310 339 - -
Sto2g0490 339 CDD CYCLIN 82 175 IPR013763 -
Sto2g0490 339 Pfam Cyclin, C-terminal domain 185 281 IPR004367 -
Sto2g0490 339 PANTHER CYCLINS 1 330 IPR039361 -
Sto2g0490 339 SMART Cyclin_C_2 185 310 IPR004367 -
Sto2g0490 339 Gene3D - 65 183 - -
Sto2g0490 339 MobiDBLite consensus disorder prediction 25 48 - -
Sto2g0490 339 Pfam Cyclin, N-terminal domain 55 182 IPR006671 -
Sto2g0490 339 SUPERFAMILY Cyclin-like 50 182 IPR036915 -
Sto2g0490 339 MobiDBLite consensus disorder prediction 26 45 - -
Sto2g0490 339 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Sto2g0490 339 PANTHER CYCLIN-D2-1-LIKE 1 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0490 Sto-Chr2 4237388 4239602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0490 7 279 Core Cell Cycle Gene Families AT1G70210 41.958 2.90e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0490 K18810 - tcc:18608104 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0490 2 4237388 4239602 Sto2g0490 2 4237388 4239602 ECH
Sto2g0490 2 4237388 4239602 Sto10g0380 10 3041061 3042687 ECH