Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0470 ATGGAGGATGATCGTTATGACGGTGGTAGGAAACCACATCATCTTCCATCTCTCCATTCATGGCACCTTTGTCCCCTTGTTGGCTGGAAGTTTGCTCACCCAGAAAGAAGAGTAACTGGCTACCAAACAAGCTTGGCAGTGGTGAGAAGACTCACCTCCTCTAAGTTGCAGGTAATGGATTTCTTAAAGCAAACCAAGAAAACCAAAACGACAGGTCGTAAGAAGATCGAGATTAAGGAAATCAACAAGGAAGCGAACAAGCAAGTCACCTTTTCAAAACGACGTGCCGGCCTCTTCAAGAAAGCCTGCGAGCTCTGCGTTTTGTGCAACGCTCAGCTCGCCGTCATCGTCTTCTCTCCCGCCGACAAGGGATGGGATAATAGAGGgaggaattggtgggaggaagggATTGAGGAGATGGATCTGGAGGAGTTGGAGCAGTATGTGGCGGCCATGAATGAGTTGAGGAGGAAGGTGATTGCGAGGGCCGATGAGTTGATGATGAGATCTGCGATGATGATGCCTTCCGCTACGGCGTCGTTTTACGGGGAGAGTTCGTCTGGAGGAAGTGAtcttgctggtggtggtgatcACGCAAAGTttggGCATGGCCAAAAAGCAAAGGCAAAACAGCAAAAGCAAAAACAGCACCAGCAGAAACAGCTAACAGTAAAACAGCAACAGCAAAAACAGCACCAGCAAAAACAGCAAACAGCTGAAAAGAATCCAGAAACAGagaaaaaaccagcaaaaacagcAAACAGCTAA 768 0.4362 MEDDRYDGGRKPHHLPSLHSWHLCPLVGWKFAHPERRVTGYQTSLAVVRRLTSSKLQVMDFLKQTKKTKTTGRKKIEIKEINKEANKQVTFSKRRAGLFKKACELCVLCNAQLAVIVFSPADKGWDNRGRNWWEEGIEEMDLEELEQYVAAMNELRRKVIARADELMMRSAMMMPSATASFYGESSSGGSDLAGGGDHAKFGHGQKAKAKQQKQKQHQQKQLTVKQQQQKQHQQKQQTAEKNPETEKKPAKTANS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0470 255 MobiDBLite consensus disorder prediction 181 255 - -
Sto2g0470 255 Coils Coil 210 230 - -
Sto2g0470 255 Gene3D - 84 160 IPR036879 GO:0003677|GO:0046983
Sto2g0470 255 PANTHER MADS BOX PROTEIN 129 240 - -
Sto2g0470 255 PANTHER MADS BOX PROTEIN 71 124 - -
Sto2g0470 255 PRINTS MADS domain signature 73 93 IPR002100 GO:0003677|GO:0046983
Sto2g0470 255 PRINTS MADS domain signature 93 108 IPR002100 GO:0003677|GO:0046983
Sto2g0470 255 PRINTS MADS domain signature 108 129 IPR002100 GO:0003677|GO:0046983
Sto2g0470 255 ProSiteProfiles MADS-box domain profile. 71 131 IPR002100 GO:0003677|GO:0046983
Sto2g0470 255 SUPERFAMILY SRF-like 72 126 IPR036879 GO:0003677|GO:0046983
Sto2g0470 255 MobiDBLite consensus disorder prediction 216 236 - -
Sto2g0470 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 81 123 IPR002100 GO:0003677|GO:0046983
Sto2g0470 255 PANTHER AGAMOUS-LIKE 83-RELATED 129 240 - -
Sto2g0470 255 PANTHER AGAMOUS-LIKE 83-RELATED 71 124 - -
Sto2g0470 255 SMART madsneu2 71 130 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0470 Sto-Chr2 4064807 4070518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0470 72 162 Type I MADS-box Gene Family AT1G72350 39.516 1.64e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto2g0470 SRF-TF 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0470 - - gmx:100782074 91.2781