Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0429 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAAACCATTACTTTGGAGGTTGAGAGTTCGGACACCATTGACAATGTGAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCAGACCAGCAGAGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAACatccaaaaggagtccacccttCACCTTGTGCTGCGTCTTCGTGGTGGATTCTAA 234 0.4359 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0429 77 CDD Ubl_ubiquitin 1 76 - -
Sto2g0429 77 Gene3D - 1 77 - -
Sto2g0429 77 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Sto2g0429 77 PANTHER UBIQUITIN 1 76 - -
Sto2g0429 77 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sto2g0429 77 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sto2g0429 77 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sto2g0429 77 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sto2g0429 77 SMART ubq_7 1 72 IPR000626 GO:0005515
Sto2g0429 77 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sto2g0429 77 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Sto2g0429 77 PANTHER - 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0429 Sto-Chr2 3706640 3706873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0429 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.14e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0429 - K08770 rcu:107262154 152.91