Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0417 ATGTCCCACAAGAGCTTGTCGGACAGTGATTTGGTAGGGAAAGGGAAGGACGATGATTTTGAGACCAAATCCATGACTGAGACAACCATGGATGCTCCTAATTCTGGCGATGAGGACCAAGAAGACCCTAACCAACGTCCCAAAAAGAAGCGTTACCACCGCCACACCCAACgccaaattcaagaaatggaagcattctTCAAGGAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGTTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAACGCACCCAAATGAAGgcTCAACATGAACGGCATGAGAATGCTATTCTGAAGGCTGAGAATGAAAAGCTGCGAGCTGAGAACCATAGGTACAAAGAAGCCCTAACCAACGCCTCATGCCCTAACTGTGGAGGCCCAGCTGCCCTTGGTGAAATGTCCTTTGACGAGCAGCACCTCAGGATTGAGAATGCTCGCTTAAGAGAAGAGATAGATAGGATATCAGGGATAGCAGCGAAGTACGTAGGAAAGCCCGTGACATCATTGTCTCACCATCACGTGGCATCATCACGGTCTCTTCAGGAAGAGCTTGGAGTAGGAAGTAACTTTGGGTCACAATCAGGGATGGTAGGGGAAATGTACTGTGGGAATAACAGTGAGCTACTTAGGTCTCTCCCATTGCCTTCTGAAGCTGATAAGCCCATGATTGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTCACCAGATTGGCCCAGGCCCAGCCTGGAGATCCCTTGTGGATTCAtgtttctaataataataacaacaacaactcctcttcttcttcttgttcttcttcttcttctaataaTACTCATAATGCTGAGATTCTGAATGAAGAAGAGTACTTTAGGAGTTTTCCTCGAGGCATTGGGCCTAAGCCCTTGGGCTTTAGATCTGAAGCCTCCAGGGAATCCGCTGTGGTCATCATGAGCCATACTCACCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCAACTGTGTTCAGCGGAATTGTTTCAAGAGCAATGACACTTGAAGTACTATCAACTGGAGTCGCAGGAAACTACAACGGTGCTCTGCAAGTGGTAATTAATCAACAATTTCTATTTTCTGAAGTGGCTGAATTCCAAGTGCCTTCACCACTTGTTCCGACAAGAGAGAACTACTTCGTGAGGTACTGTAAGCAGCACCCAGACGGGACATGGGCAGTAGTAGATGTTTCCTTAGACAACCTTCGACCCACTGCTTTCTCAAGAAGCCGAAGAAGGCCTTCTGGTTGTATCATCCAAGAATTGCCAAATGGCTACTCTAAGGTTACTTGGGTTGAACATGTAGAAGTGGATGACAGATCCGTACACAACATATACAGAAGTCTAGTAAACTCTGGGCTTGCCTTTGGAGCCAAACGTTGGGTTGCCACATTAGATAGACAATGTGAACGTCTTGCTAGTTCCATGGCCAGCAACATTCCTGCAGGAGACCtctgtgGTCACGGGTTCAGAATCTGGATAAACAGGTCTCTCAATATAatgatgatatgtatatatatatatgcagtgaTAACGAGTGCTGAGGGGAGGAAGAGTATGCTGAAGCTGGCAGAGAGGATGGTGATGAGCTTCTGTACAGGAGTGGGGGCATCAACAGCACATGCATGGACGACACTATCAGGTAATAGTGATGATGTGAGAGTGATGACCAGAAAGAGTATGGATGATCCAGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCTACTTCCTTCTGGCTCCCTGTTCATCCTAAGAGGGTTTTCAATTTCCTCAGAGATGAGAACTCTAGAAGTGAGTGGGATATTCTATCTAATGGGGGTCTAGTTCAAGAAATGGCACACATTGCTAATGGTCGTGATCCTGGCAACTGTGTCTCTTTACTTCGCGTTAATAGTGGAAATTCAAGCCAAAGCAACATGCTGATACTGCAAGAGAGCTGCACAGACAGTACAGGATCATATGTAATATATGCACCTGTTGATATAGTTGCAATGAATGTGGTGCTAGGAGGTGGTGACCCTGACTATGTTGCCCTCTTGCCTTCTGGTTTTGCCATTCTCCCTGATgcctcttcttcatcttcatcacttCTGAACAATAACAATATCATCAATAATAATGGAGAAgctggaggaggaggaggaggaggttcTCTTCTCACTGTTGCATTTCAGATCTTGGTTGACTCTGTCCCCACAGCTAAGTTGTCTCTGGGCTCTGTGGCTACTGTTAACAGCTTGATTAAGTGCACTGTTGAAAGGATCAAAGCTGCTGTCATGTCTGACACCACTTAA 2361 0.4299 MSHKSLSDSDLVGKGKDDDFETKSMTETTMDAPNSGDEDQEDPNQRPKKKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENHRYKEALTNASCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSLSHHHVASSRSLQEELGVGSNFGSQSGMVGEMYCGNNSELLRSLPLPSEADKPMIVELAVAAMEELTRLAQAQPGDPLWIHVSNNNNNNNSSSSSCSSSSSNNTHNAEILNEEEYFRSFPRGIGPKPLGFRSEASRESAVVIMSHTHLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVVINQQFLFSEVAEFQVPSPLVPTRENYFVRYCKQHPDGTWAVVDVSLDNLRPTAFSRSRRRPSGCIIQELPNGYSKVTWVEHVEVDDRSVHNIYRSLVNSGLAFGAKRWVATLDRQCERLASSMASNIPAGDLCGHGFRIWINRSLNIMMICIYIYAVITSAEGRKSMLKLAERMVMSFCTGVGASTAHAWTTLSGNSDDVRVMTRKSMDDPGRPPGIVLSAATSFWLPVHPKRVFNFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSGNSSQSNMLILQESCTDSTGSYVIYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDASSSSSSLLNNNNIINNNGEAGGGGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVMSDTT 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0417 786 SMART START_1 242 493 IPR002913 GO:0008289
Sto2g0417 786 Pfam Homeodomain 49 104 IPR001356 GO:0003677
Sto2g0417 786 Gene3D - 34 122 - -
Sto2g0417 786 MobiDBLite consensus disorder prediction 1 25 - -
Sto2g0417 786 MobiDBLite consensus disorder prediction 1 57 - -
Sto2g0417 786 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 9 783 - -
Sto2g0417 786 CDD START_ArGLABRA2_like 237 492 - -
Sto2g0417 786 SUPERFAMILY Homeodomain-like 32 106 IPR009057 -
Sto2g0417 786 SUPERFAMILY Bet v1-like 235 495 - -
Sto2g0417 786 Gene3D - 318 498 IPR023393 -
Sto2g0417 786 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 9 783 IPR042160 -
Sto2g0417 786 ProSiteProfiles START domain profile. 233 496 IPR002913 GO:0008289
Sto2g0417 786 Coils Coil 100 135 - -
Sto2g0417 786 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Sto2g0417 786 MobiDBLite consensus disorder prediction 265 289 - -
Sto2g0417 786 SMART HOX_1 47 110 IPR001356 GO:0003677
Sto2g0417 786 Pfam START domain 293 493 IPR002913 GO:0008289
Sto2g0417 786 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Sto2g0417 786 SUPERFAMILY Bet v1-like 537 778 - -
Sto2g0417 786 CDD homeodomain 49 107 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0417 Sto-Chr2 3639514 3643772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0417 1 784 Homeobox Transcription Factor Family AT4G04890 74.495 0.0 1149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto2g0417 START 1.2e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0417 K09338 - mnt:21396084 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0417 2 3639514 3643772 Sto2g0417 2 3639514 3643772 ECH