Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0397 ATGATGCAACCTGGACCTGGCATGCCTCCGCCAACCATGGCACAACAGCCTAACCAGCAGTACCAGCAACAACAGCAACCCTACATGATGATGCCGCCGCAGGCTCAGGGGCCACCGATGTGGGCACCTTCTGCCCAGCCGCCGCCGCAGACCGATCCGGCGAGCGCCGATGAGGTCCGTACTTTGTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTATTTGTACACTTGTTTTGCTCATACCGGCGAGGTGGCCTCTGTGAAAGTTATTCGGAATAAGCAAAGTAATCAGTCAGAAGGTTATGGGTTTATTGAGTTTTTCACTCGTGCAGCTGCTGATAGAGTACTCCAAACATTTAATGGCACCATTATGCCAAATGGTGGGCAAAGCTTCAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGTCATGATGATACTCCAGATTACACAATATTTGTTGGAGATTTGGCTGCAGATGTTACAGATTACATGCTGCAGGAGACATTTAGGGCTCGTTATACCTCAGTTAAAGGTGCAAAAGTGGTTATTGACAGACTCACTGGGAGGTCAAAGGGTTATggttttgtcaagtttggagatGAGAGTGAACAAATACGAGCTATGACTGAGATGCAAGGGGTTCTGTGTTCAACAAGACCCATGCGGATTGGACCAGCCTCAAACAAAAATCCCGGGACTCAGTCAAAAGAAGCAGGGTGTCAAGAGGCTCTGTCGTCACGGAGCCTGGAACTGATTTCAGCTGAAATGGTTACCATTTTAGTGCCTTCATATCAGAATACACAAGGGGGGGCACAGAATGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCCAATGTTACTGATGATCATTTGAGGCAAGTGTTTGGTCAGTATGGGGAGTTAGTGCATGTCAAGATTCCAGCAGGAAAGCGATGTGGATTTGTGCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCACTGAGGATGTTAAACGGAACGCTATTGGGTGGACAAAATGTTCGTCTCTCTTGGGGTCGTAGTCCTTCAAACAAACAGACTCAGGCAGATTCAAACCAGTGGAATGGTGGTGGGTATTACGGATATGCTCAGGGGTACGAGAATTATGGATATCCTCCTTCTTCCGGTGCCGGTGCTGGTGGTGCTCAGGATCCCAACATGTATGGCAGCTATCCTGGATATGCTAATTACCAACCACCGCAGCAACAGCAGCAAATGGGATATAGTTGA 1275 0.4706 MMQPGPGMPPPTMAQQPNQQYQQQQQPYMMMPPQAQGPPMWAPSAQPPPQTDPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQSNQSEGYGFIEFFTRAAADRVLQTFNGTIMPNGGQSFRLNWATFSAGERRHDDTPDYTIFVGDLAADVTDYMLQETFRARYTSVKGAKVVIDRLTGRSKGYGFVKFGDESEQIRAMTEMQGVLCSTRPMRIGPASNKNPGTQSKEAGCQEALSSRSLELISAEMVTILVPSYQNTQGGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQTQADSNQWNGGGYYGYAQGYENYGYPPSSGAGAGGAQDPNMYGSYPGYANYQPPQQQQQMGYS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0397 424 Gene3D - 144 243 IPR012677 -
Sto2g0397 424 Gene3D - 267 367 IPR012677 -
Sto2g0397 424 SUPERFAMILY RNA-binding domain, RBD 268 380 IPR035979 GO:0003676
Sto2g0397 424 MobiDBLite consensus disorder prediction 14 31 - -
Sto2g0397 424 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 421 - -
Sto2g0397 424 SUPERFAMILY RNA-binding domain, RBD 23 141 IPR035979 GO:0003676
Sto2g0397 424 CDD RRM2_SECp43_like 152 231 - -
Sto2g0397 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 349 IPR000504 GO:0003723
Sto2g0397 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 218 IPR000504 GO:0003723
Sto2g0397 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 127 IPR000504 GO:0003723
Sto2g0397 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 140 IPR000504 GO:0003723
Sto2g0397 424 MobiDBLite consensus disorder prediction 410 424 - -
Sto2g0397 424 SMART rrm1_1 285 352 IPR000504 GO:0003723
Sto2g0397 424 SMART rrm1_1 154 228 IPR000504 GO:0003723
Sto2g0397 424 SMART rrm1_1 61 136 IPR000504 GO:0003723
Sto2g0397 424 MobiDBLite consensus disorder prediction 404 424 - -
Sto2g0397 424 MobiDBLite consensus disorder prediction 1 56 - -
Sto2g0397 424 CDD RRM1_SECp43_like 61 141 - -
Sto2g0397 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 356 IPR000504 GO:0003723
Sto2g0397 424 CDD RRM3_NGR1_NAM8_like 283 354 - -
Sto2g0397 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 232 IPR000504 GO:0003723
Sto2g0397 424 MobiDBLite consensus disorder prediction 32 50 - -
Sto2g0397 424 Gene3D - 9 143 IPR012677 -
Sto2g0397 424 SUPERFAMILY RNA-binding domain, RBD 142 238 IPR035979 GO:0003676
Sto2g0397 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0397 Sto-Chr2 3440575 3444473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0397 59 363 Eukaryotic Initiation Factors Gene Family AT2G23350 27.419 5.85e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0397 - - gmx:100801562 602.053