Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0365 ATGCCTACCTTACTTCTATTCCTTTCATCCTGCTTTCTTCTTCTACACAACATTTTTGCTTCTTCAAACACAGATAATTCAACACAGGAATACCTTCCTTACATCAACCCTAAAACTCCTTACATCAACAACAACGTTGTCTTCAACAAGATCGACTCGTGCTGGCGAGGCAAATCCGATTGGGACTCGAACCGGCAAGCCCTAGCAGATTGTGGAATCGGGTATGGCAAAGATGCCATTGGAGGGAAGTATGGGGCTATATATAAGGTCACTGACCCTTCTGATGACcctgtgaaccctaaacctggGACACTTCGTTATGGTGTCATCCAAACACAGCCTCTGTGGATAATATTTGAGAAAGACATGTTTATTAGACTGAAGAATGAGCTTATAGTGAATAGCTATAAGACCATTGATGGAAGAGGAGCCAAAGTGGAGATTGGAAAAGCAGGGATGGTTAGGAgtagtgtggaacatgtgggccATCGTGAGGGATCAGATGGAGATGCAATTAGCATTTTTGGTTCTTCAAATATTTGGATCGATCATTGCTTCTTAGCTCGTTGCACTGATGGCCTTATTGATGTTATTCATGCCTCCACTTCTGTCACCATCTCCAACAATTACTTCACCCAACAtgataaagtgATGCTGCTAGGACACAGCGATGAATACACAGCTGATAGAATAATGAAAGTGACGGTAGCCTTTAACAAATTTGGCAGTGGTCTTATAGAAAGAATGCCAAGATATGGGTATGCACATGTGGTGAACAATCAGTACGATGAGTGGTTGATGTATGCGATTGGAGGGAGTGCCGATCCTACTATTTTGAGCGAAGGGAATTACTTCGTGGCTTCAAATAATGCAAAGCAAGTGACGAAGAGAGAAACAAGTGAGAAATGGAATAGCTGGAAATGGAGGAGTTTCAGAGATGAATTCTTGAATGGAGCTTACTTTGTTCCATCAGGTTATGGAACTTGCACACCTTACTATTCTCCTGATCAGTCTTTTATTGCTGCTCCTGCTTCTTTGGTGCCTCTTTTAACCCTCAATGCTGGCCCATTGCCTTGTGTTTTTGGCAATGCATGTTAA 1098 0.4016 MPTLLLFLSSCFLLLHNIFASSNTDNSTQEYLPYINPKTPYINNNVVFNKIDSCWRGKSDWDSNRQALADCGIGYGKDAIGGKYGAIYKVTDPSDDPVNPKPGTLRYGVIQTQPLWIIFEKDMFIRLKNELIVNSYKTIDGRGAKVEIGKAGMVRSSVEHVGHREGSDGDAISIFGSSNIWIDHCFLARCTDGLIDVIHASTSVTISNNYFTQHDKVMLLGHSDEYTADRIMKVTVAFNKFGSGLIERMPRYGYAHVVNNQYDEWLMYAIGGSADPTILSEGNYFVASNNAKQVTKRETSEKWNSWKWRSFRDEFLNGAYFVPSGYGTCTPYYSPDQSFIAAPASLVPLLTLNAGPLPCVFGNAC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0365 365 Gene3D - 48 358 IPR012334 -
Sto2g0365 365 Pfam Pectate lyase 167 285 IPR002022 -
Sto2g0365 365 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Sto2g0365 365 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Sto2g0365 365 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Sto2g0365 365 PANTHER PECTATE LYASE 18-RELATED 150 364 IPR045032 GO:0030570
Sto2g0365 365 PANTHER PECTATE LYASE 18-RELATED 31 150 IPR045032 GO:0030570
Sto2g0365 365 PANTHER PECTATE LYASE 150 364 - -
Sto2g0365 365 PANTHER PECTATE LYASE 31 150 - -
Sto2g0365 365 SUPERFAMILY Pectin lyase-like 49 356 IPR011050 -
Sto2g0365 365 SMART amb_all 122 291 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0365 Sto-Chr2 3099448 3102834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0365 4 365 Polysaccharide Lyase AT4G22080 59.596 1.15e-163 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0365 K01728 - gmx:100803229 562.377