Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0350 ATGCTTCCAAACAATAATACTTGTGGTTTGAGCTTCCCAAGTTGTTTCATGGAAACCcaacacaacaacaacaacgatGGAAGTAGTAGTTCCTCTTCTTCTAATTCTCTCAAAGCCAAGATCATGTCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACGTCAATTGTCAAAAGgtgGGAGCGCCGCCGGAAGTGGTGGCGAGGCTAGATGAAGCGTGTGCTACGGCGGCGGCGATAGGAGGAGGCGGCGGCGGCGTGGGAGAAGATCCGGCGCTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTCATAAAGTATGAGCAAGAGCTTTCAAAACCCTTCAAGGAAGCCATGTTCTTTCTTCACAATATTGAGCGTCAGTTCAAATCTCTCACCCTTGATTCTCCTCTTGACTTTAATGCTTGTAAGGAGAACACTACTGATCGGAACGAATCATCCGAAGACGATATTGATCTGCACAACAACAATAGTGTGATCGATCCTCAAGCGGAGGACCGGGAATTGAAGGGTCAACTTCTGCGAAAGTACAGCGGCTACTTGGGCAGTCTGAAACAGGAATTcatgaagaagaggaagaaaggaaAGCTGCCTAAAGAGGCAAGGCAACAGTTGCTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCTTCTGAGTCACAGAAGGTGGCACTAGCAGAATCAACAGGTTTGGATCAGAAGCAAATAAATAATTGGTTCATAAACCAAAGGAAGCGTCACTGGAAGCCTTCTGAGGATATGCAGTTTGTGGTGATGGATCCAATCCATCCTCACTATTTCATGGACACTAATCTCCTCGCCAACCCTTATTCCATGGATTTTTCCCACACTATGCTCTGA 885 0.4475 MLPNNNTCGLSFPSCFMETQHNNNNDGSSSSSSSNSLKAKIMSHPHYPRLLAAYVNCQKVGAPPEVVARLDEACATAAAIGGGGGGVGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMFFLHNIERQFKSLTLDSPLDFNACKENTTDRNESSEDDIDLHNNNSVIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPIHPHYFMDTNLLANPYSMDFSHTML 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0350 294 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 283 - -
Sto2g0350 294 Pfam KNOX1 domain 37 75 IPR005540 GO:0003677|GO:0005634
Sto2g0350 294 ProSitePatterns 'Homeobox' domain signature. 233 256 IPR017970 GO:0000981|GO:0006355
Sto2g0350 294 ProSiteProfiles 'Homeobox' domain profile. 195 258 IPR001356 GO:0003677
Sto2g0350 294 Pfam ELK domain 175 196 IPR005539 GO:0003677
Sto2g0350 294 SUPERFAMILY Homeodomain-like 197 273 IPR009057 -
Sto2g0350 294 ProSiteProfiles ELK domain profile. 175 195 IPR005539 GO:0003677
Sto2g0350 294 SMART KNOX1_2 35 79 IPR005540 GO:0003677|GO:0005634
Sto2g0350 294 SMART HOX_1 197 262 IPR001356 GO:0003677
Sto2g0350 294 Coils Coil 144 164 - -
Sto2g0350 294 Pfam Homeobox KN domain 215 254 IPR008422 GO:0003677|GO:0006355
Sto2g0350 294 MobiDBLite consensus disorder prediction 145 168 - -
Sto2g0350 294 PANTHER - 18 283 - -
Sto2g0350 294 CDD homeodomain 207 259 IPR001356 GO:0003677
Sto2g0350 294 Pfam KNOX2 domain 87 133 IPR005541 GO:0003677|GO:0005634
Sto2g0350 294 SMART ELK_2 175 196 IPR005539 GO:0003677
Sto2g0350 294 SMART KNOX2_2 83 134 IPR005541 GO:0003677|GO:0005634
Sto2g0350 294 Gene3D - 200 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0350 Sto-Chr2 2990712 2996257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0350 16 294 Homeobox Transcription Factor Family AT1G62360 75.517 7.28e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto2g0350 KNOX2 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0350 - - tcc:18597223 410.609