Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0344 ATGAGTCAACTCGGTATGATATTGCAGGAATCGCTTCAGAGAGAGCGAGAAGAACGAGGAAGGACGATTCTGGGTTTGTTAACGGAGCAAATGGAAGGCGTCGATCATACAGAACCACGCAGGAGACGCAGTTTGAAAGAACGGTTCAGATTCACCGGAATGGGGTGTTGTGGGGCCACCTGGGGTTTCCGTCCGGCCGCCACCGTGAGATTCAACGAAGACGACGACGACCAAGAAGATGAACGCCGGCAGCAGCAGCGACGGCTCAACGACCCGGACTGCGTCAACCCGGTCCCGTCCGGATCGGGTATGAATCTGGCGGCGGCGTTGGCGGCGGAGCGTCAGTTCCGGGGGTCGTCGCAAGAGGCGGAGGCGGGATCCGCCACCGGGAACGAGTTGCAACGGAGGCTGCTGGAGGAAACGGAGGGTGGGGAGATGACGGTGACGGTGACGGAGAAAGAAGGGGTGGGAAATGATACGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGAGCGGCGTTTATCCCATGCGGTCATACTTTTTGCAGAGTGTGCTCCAGAGAGCTGTGGTTGAATCGAGGGAGCTGTCCCCTTTGCAACCGTTCGATCATCGAGATTCTCGACATTTTCTGA 633 0.5782 MSQLGMILQESLQREREERGRTILGLLTEQMEGVDHTEPRRRRSLKERFRFTGMGCCGATWGFRPAATVRFNEDDDDQEDERRQQQRRLNDPDCVNPVPSGSGMNLAAALAAERQFRGSSQEAEAGSATGNELQRRLLEETEGGEMTVTVTEKEGVGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIIEILDIF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0344 210 CDD RING-HC 162 199 - -
Sto2g0344 210 SMART ring_2 162 199 IPR001841 -
Sto2g0344 210 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Sto2g0344 210 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 210 - -
Sto2g0344 210 PANTHER OS01G0917900 PROTEIN 21 210 - -
Sto2g0344 210 MobiDBLite consensus disorder prediction 69 89 - -
Sto2g0344 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 209 IPR013083 -
Sto2g0344 210 SUPERFAMILY RING/U-box 146 207 - -
Sto2g0344 210 MobiDBLite consensus disorder prediction 69 100 - -
Sto2g0344 210 Pfam Zinc finger, C3HC4 type (RING finger) 159 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0344 Sto-Chr2 2900978 2901700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0344 23 210 C3H Transcription Factor Family AT4G22250 55.556 4.21e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0344 - - gmx:100804292 227.254