Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0340 ATGGGGAAATCTGGGGGTAGGAAAAAGAAGGGAGGTTCGAGCCATGTTAACATTGACAATTCAGCTCCAAGTGCTAATGGTGGTGTGGATTTGGACTCTTCGATCTTTTTGAAAAGAGCCCATGAGCTTAAGGAAGAAGGGAATAAGAGGTTTCAGAATAAGGACTTTGCTGGTGCTCTTGAGCAGTATGAGAATGCCCTTCGACTAACGCCCAAGACCCACCCTGACAGAGCAGTCTTTCACAGCAACAGAGCGGCATGCTTGATGCAAATGAAGCCCATAGATTATGAAACAGTGATTGCTGAGTGCACCATGGCTCTGCAGGTCCAGCCTCAATTTGTGCGAGCACTTCTTCGGAGGGCTCGGGCATTCGAGGCTATAGGGAAGTATGAAATGGCCATACAGGATGTACAAGTCTTATTGGGAGCTGACCCTAATCATCGTGATGCTCTGGAGATTTTCCAGAGACTGAGGGCAGCATTGGGACCTCGCCAGGAAGCCCAGCAAGATCTTCAGAGTCGACCATCCCCTGCTGCTCTAGGTGCTTCTGCGGTTCGTGGTGCCCCTATTGCTGGTTTAGGGCCATGCTTACCAGCCAGGCCAGTACCTAAGAAGGCGGCAAACTCAACAGCTGGATCAGTTGGGTTGCTTAATAGTAAGCCAGAAAAGTACCAATCAACTTTACTAACTGAAAATAGTCCTGAGTCCAAGTCCCAAATGCCCAAACTTGTGTTGAAGCCTTCAAATGGTTCAGCCAGATCACTTAACCCAACAAAAGAGAACCAGGAGCTTCCATCTCATTCATCAACTTCTCATGGACATGATTCGGATGTTGTAATTCAGTGGAGGCCCTTGAAGCTTGTTTATGATCATGACATTAGGCTTGCTCAGATGCCAGCCAATTGCAATTTTAGAATTCTAAGAGATATAGTGAGCAAACGATTTCCAACATCAAAGTCAGTTCTGATCAAGTATAAGGACAGTGATGGTGATTTGGTGACCATAACCTCTACTGATGAACTCAGATTGGCAGAGTCTAGTGCTGATAGCCATCTTATAAAGGAACCTGAAGCAGATAAAAGTGATTCATTCGGGATGTTGAGACTTCATATTGTTGAAGTTAGTCCTGAGCAGGAGCCTCCTTTACCAGAAGAAGAGGAAGTAAAACCTGTTGAGAGTGAAGGTAACAAGGGAGATGAGAGTGGGTCACATACTTCTATCAGCGAATCTGTCTCAGAAGCTCCTGATACTGAGGTTGATAAGACAGGTAAAGAAGCTGCAAAGGAAAAACCAGCAGCCACAGAAGATGCTGAATGCAAAGAAGTGGAGATGGATGACTGGTTATTTGAGTTTGCACAGCTTTTCCGTTCTCATGTTGGTATTGATCCCGATGCCCACATTGACTTGCATGAACTAGGGATGGAGCTTTGTTCAGAGGCACTTGAGGAAACAGTAACTAGTGAAGAGGCTCAAGGTCTTTTTGACAAGGCTGCTTCAAAATTCCAGGAAGTAGCTGCTTTGGCATTCTTCAACTGGGGAAATATTCACATGTGTGCAGCTAGAAAACGAATTCCCTTGGAAGAATCAAGTGGGAAGGAGGTAGTGGCAGAAAAGCTTCAAATGGCTTTTGATTGGGTCAAGGAAAAATATTCTTTGGCAAGAGAGAAGTATGAGGAAGCACTTTTGATAAAACCAGACTTTTATGAGGGATTGTTGGCTTTGGGTCAGCAACAATTTGAAATGGCCAAACTTAATTGGTCATTTGCACTTGCTAAGAAGATCGATGTGTCAGAATGGGATTCTTCAGAGACACTTAAACTTTTTGACAGTGCTGAGGAGAAGATGAAAGCTGCAACTGATATATGGGAAAAGTTGGAGGAACAGCGAGCAAATGAACTGAAGGACCCAAATGCAAGCAAGAAAGAAGAACTactgagaagaagaaaaaaacaggGAGGTGGTGCTGAAGGTGAGATCTCTGCTGGTGGTGGTCAGGGTGATATATCTGCAGAAGAAGCTGCAGAGCAAGCAGCTGTCATGAGATCACAGATTCACCTCTTCTGGGGTAATATGCTATTTGAACGTTCCCAAGTTGAATACAAATTAGGGCTGGGTGGTTGGAAGAAAAATTTGGATACTGCCGTTGAGCGTTTTAAGCTCGCAGGAGCTTCAGAAGCTGACATTTCGTTGGTTCTAAAGAATCATTTCTCTAATGGGGATGCTGGGGAAGGAGATGCTAAGAAGATTCAGAACCTGCAAAAGACTGGTGAAACAGATAAGGCCAATGATGCCAGTCAGGTATGA 2304 0.4431 MGKSGGRKKKGGSSHVNIDNSAPSANGGVDLDSSIFLKRAHELKEEGNKRFQNKDFAGALEQYENALRLTPKTHPDRAVFHSNRAACLMQMKPIDYETVIAECTMALQVQPQFVRALLRRARAFEAIGKYEMAIQDVQVLLGADPNHRDALEIFQRLRAALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVPKKAANSTAGSVGLLNSKPEKYQSTLLTENSPESKSQMPKLVLKPSNGSARSLNPTKENQELPSHSSTSHGHDSDVVIQWRPLKLVYDHDIRLAQMPANCNFRILRDIVSKRFPTSKSVLIKYKDSDGDLVTITSTDELRLAESSADSHLIKEPEADKSDSFGMLRLHIVEVSPEQEPPLPEEEEVKPVESEGNKGDESGSHTSISESVSEAPDTEVDKTGKEAAKEKPAATEDAECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQGLFDKAASKFQEVAALAFFNWGNIHMCAARKRIPLEESSGKEVVAEKLQMAFDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLNWSFALAKKIDVSEWDSSETLKLFDSAEEKMKAATDIWEKLEEQRANELKDPNASKKEELLRRRKKQGGGAEGEISAGGGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVEYKLGLGGWKKNLDTAVERFKLAGASEADISLVLKNHFSNGDAGEGDAKKIQNLQKTGETDKANDASQV 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0340 767 Coils Coil 608 628 - -
Sto2g0340 767 Gene3D - 284 354 - -
Sto2g0340 767 Pfam PB1 domain 282 373 IPR000270 GO:0005515
Sto2g0340 767 PANTHER PROTEIN CLMP1 1 766 IPR044517 -
Sto2g0340 767 SUPERFAMILY TPR-like 37 171 IPR011990 GO:0005515
Sto2g0340 767 ProSiteProfiles PB1 domain profile. 282 374 IPR000270 GO:0005515
Sto2g0340 767 MobiDBLite consensus disorder prediction 414 438 - -
Sto2g0340 767 SUPERFAMILY TPR-like 488 584 IPR011990 GO:0005515
Sto2g0340 767 SUPERFAMILY CAD & PB1 domains 280 352 - -
Sto2g0340 767 MobiDBLite consensus disorder prediction 628 654 - -
Sto2g0340 767 SMART PB1_new 282 374 IPR000270 GO:0005515
Sto2g0340 767 MobiDBLite consensus disorder prediction 628 668 - -
Sto2g0340 767 MobiDBLite consensus disorder prediction 227 275 - -
Sto2g0340 767 MobiDBLite consensus disorder prediction 373 439 - -
Sto2g0340 767 PANTHER - 1 766 - -
Sto2g0340 767 MobiDBLite consensus disorder prediction 382 399 - -
Sto2g0340 767 CDD PB1 285 354 - -
Sto2g0340 767 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Sto2g0340 767 SMART tpr_5 40 73 IPR019734 GO:0005515
Sto2g0340 767 SMART tpr_5 114 147 IPR019734 GO:0005515
Sto2g0340 767 SMART tpr_5 78 113 IPR019734 GO:0005515
Sto2g0340 767 MobiDBLite consensus disorder prediction 1 27 - -
Sto2g0340 767 MobiDBLite consensus disorder prediction 741 767 - -
Sto2g0340 767 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Sto2g0340 767 Gene3D Tetratricopeptide repeat domain 33 176 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0340 Sto-Chr2 2844372 2846675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0340 30 161 Calmodulin-binding Proteins AT3G25230 27.273 1.31e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0340 - - gmx:100786963 1156.74