Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0300 ttgTGGGTTGATCGACAATTGATTGATGAAAGGTCCGATGATGTTTCTGGATTCAGTCCTAGCATGATTGTTCCTCATCTGACGTCTACACAACATCCTAGTTTTCTAATGGGAATGGACCCTGGTAAACTTTTCATTGGTGGAATTTCCTGGGACACAAATGAAGAACGACTCAGACAGTACTTCCAGAATTTTGGAGATGTGGTGGAAGCAGTGATAATGAAGGATCGGACCACAGGGCGTGCCCGCGGTTTCGGCTTTATTGTTTTCGCTGATCCTTCTGTGGCTGAACGAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCCGTCCCTAGAGATGATCAGAACATTTTGAACAGAAGCAACGGCAGCATGCATGGATCACCTGGTCCTACCCGCACGAAGAAGATATTTGTTGGAGGTCTAGCATCCACCGTTACTGAAAGTGACTTTAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTTGTTGTGATGTATGACCATAACACTCAAAGGCCtagaggttttggatttatcaCCTATGATTCTGAGGAAGCTGTGGATAGAGTTTTGTATAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTTAAGCGGGCTGTTCCAAAGGAATTATCCCCCAGTCCAAGTAGAGGCCAATTAGCTGGATATAACTATGGTTTAAGTAGAGTTAGTGGCTTTTCTAATGGTTTCATTCAGGGATATAATCCAAGCTTAGTTGGAGGGCACGGACTTAGAGCAGACGGCAGATTTAGTCCTGTTACTGTTGGTCGAAATGGATATCCTCCTTTAAGTCCTAGTTACGGGACAGGATTCAATTTCGAGCCAGCATTTAGTCAAAATGGAAATTCAAACTTAGCTTCTACCCTTTTCTTAGGACGGTCACTGAACCCTTCGTATAATGGAAATTCAAGCAGGTACCATAATGCTATGGGGTATGCCGGTACAACCGGAGGCATCAATTCAACTGCAAGTTCAACAAATCAGAGTTTATGGGGTAATGAAAATCTTAACTATGCCACTAACCCTGCAAATTCTGATGTTTTTCTTGGGTATGGAAGTCAAAATTCAAGCATGGGTTCTTTCGGTAATATTGGAACACTTTGGAGTTCCTCCCCTAGTGCAGATCAAGTTGGAACTGTCGGCTCCGGCTATGGTAAGGGCAGCCAGTATTATGGCTCTGGAGATACTAATTTAGGAGCAAAAGCAGTAGGATATGGAAAAAATAGCGAGGCCATTGTTGATTCAGCATCATCTTATGGTCTGTCAGATGGAAATTATGATGCAGCATATAAAAACATCTATGAAGCTGGGTCATTTTTTGGTGACCACACTTGGAGATCATCACCTTCAGAACTAGAAGATAATGGTTCTCTTGGTTATGACCTTGGAAATGCTGTTTCAGATTTGATGAGCAAAAGCTCTGGTGGTCACATTGGGGCTTATACTGTTGCAAATAGACAATCAAATAGAGGTAATACTAATAGGAATTGCTGCCTAGGAAGGTTATGCTATGGATGCTCAGACTCAGATGTTGTTATAGTGAAGAAGTTATGTCTGTGTGCAGAAGGGGCAGATGCTGGAAATAACAACCATCTAAACACACGTGCAAAAGCCAACATTTGGCCTTATGGTATTGATTTAAACAATGTTAGAGGTCGATTCACAAATGGAAAAACTGGAGCTGATTTTGCTGCTATTAATTTAGGCTTACCAATAGCTCCTCCATATTTAAATCTTTCTTCCTCTGAAAGAAGTCGAATAGTCACTGGGATAAATTATGCTTCAGGAGCATGTGGAATCTTAAACACAACTAGAGAGGCAAGATATTGA 1884 0.4076 LWVDRQLIDERSDDVSGFSPSMIVPHLTSTQHPSFLMGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNILNRSNGSMHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPSPSRGQLAGYNYGLSRVSGFSNGFIQGYNPSLVGGHGLRADGRFSPVTVGRNGYPPLSPSYGTGFNFEPAFSQNGNSNLASTLFLGRSLNPSYNGNSSRYHNAMGYAGTTGGINSTASSTNQSLWGNENLNYATNPANSDVFLGYGSQNSSMGSFGNIGTLWSSSPSADQVGTVGSGYGKGSQYYGSGDTNLGAKAVGYGKNSEAIVDSASSYGLSDGNYDAAYKNIYEAGSFFGDHTWRSSPSELEDNGSLGYDLGNAVSDLMSKSSGGHIGAYTVANRQSNRGNTNRNCCLGRLCYGCSDSDVVIVKKLCLCAEGADAGNNNHLNTRAKANIWPYGIDLNNVRGRFTNGKTGADFAAINLGLPIAPPYLNLSSSERSRIVTGINYASGACGILNTTREARY 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0300 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Sto2g0300 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 202 IPR000504 GO:0003723
Sto2g0300 627 Gene3D - 139 227 IPR012677 -
Sto2g0300 627 CDD RRM1_hnRNPA_hnRNPD_like 44 114 - -
Sto2g0300 627 Gene3D - 41 124 IPR012677 -
Sto2g0300 627 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 37 510 - -
Sto2g0300 627 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 37 510 - -
Sto2g0300 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 219 IPR000504 GO:0003723
Sto2g0300 627 SUPERFAMILY RNA-binding domain, RBD 39 137 IPR035979 GO:0003676
Sto2g0300 627 SMART rrm1_1 143 215 IPR000504 GO:0003723
Sto2g0300 627 SMART rrm1_1 43 114 IPR000504 GO:0003723
Sto2g0300 627 CDD RRM2_DAZAP1 140 219 IPR034131 GO:0003723
Sto2g0300 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Sto2g0300 627 SUPERFAMILY RNA-binding domain, RBD 139 240 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0300 Sto-Chr2 2525668 2532550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0300 42 256 Eukaryotic Initiation Factors Gene Family AT2G36660 20.536 1.94e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0300 K14411 - jre:108993403 668.307