Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0283 ATGTTgaatgtggatgtgattggaaacaagaagaggaagagatgtGGGAGGGTTTTCAGATTCAAGAACTTTGGGGAGCCTGGATATCCAGTGGAGTTCAAAGGGCCATTTCGTGAGAATGTGAATGCATTGCTTGAGTTTGCAAAATTGGAGACCAAATTAGGGTTTGGAATGCCTATTTGGTCCTTCCAACTTGAGCTTCATCGCCACCCACCTTCTCATGTCTTCTTGTTTGTCATCGAAGAAGCTATTGAGGCATCTCCCAATCCTCACTGCAACCAATGTCAATATGTtgAACTACAAGGCCATATGATGCAAGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTCAATGGTCTCGAAACCGGCTCGGATCTCGCCGGACACCAGATCATGGAGTTCTGGGATCGCTTGTGCACCGGATTGCAAGCTAGgaaagtgAGTTTGAATGACATTGCACAAAAAAGAGGCATGGAGCTAAGACTCATCAATGGAATAGCACATAGTGAACCATGGTTTGGAAAATGGGGCTACAAATTTGGTAGAGGATGCTTTGGAGTGACTCAATCCACATTCCAAAAGGCCATAGAGGCCATAAGAAGCATCCCATTATATCTTCTAATCCACCACATTAATGGCAACTCCTCCTACCATGACATCCCAATGATCTTCTCAAGGTACCAAACCCTCTCAAACCAATCAATAGTCACACTCGGCGATCTATTTCACTTCATGTTAGAGCTCAAATCCCGCCTCCCTCAAGGCGAAAACTTCATTGATTCTAGCCATAACACAGGCATTTTGTTTGAACCAAATTGTCGTTGGTCCCCTAAAAGAATCGAGATGGCAACTAGGGTTATCGTCGAGGCCTTGAAAAGAGCCGAGTTCAGGTGGATTTCAAGACAAGAAGTTAGGGATGCCGCCCGATCCTACATTGGGGACACGGGGCTACTCGATTTCGTGTTGAAATCACTAGGAAACCACATTGTTGGGAACTATTTGGTTCGTCGAAGCCTGAACCCGGTCACGAAAGTCCTAGAATATTGCTTGGAAGACATCTCCAATGTTTTCCCcagtcatcatcatcttcaagaAGATAGAATTATAAAGGATAGGTACAAGATCACTAGGGCTCAAGTCATGAAGGACATGTTTTATTTGTACAAGTACATCCTAAAAGACCCAAAACCAACACAAGGATCAATTCTCTCAGCAATTCCATTGGCAGCAAGAATAATTCTTGACACTAAATATCTCATCAAAGAGTATTTTGGAGAGCTTCCTTTTCAAGTTGACTTAGGATTGGAAGGAAAACTAAGTGTTTTTTGTACAATTATGCTAAGAAATAATTACAACAATAATGATCCAAACGAAGCCTCCCCAATAATGCCACCCTATGAGTGTATCACATTGAAAAGCAATGCGACCATGAATGAGTTGAAGGTAGAAGTTGAGAGGAATTTCAGAGAGATCTATTGGGGATTGAGGAGTTTTTGTGGGGATTCAATTAAGGATTTGGAAATTGCAAATTGGAATGATATGGTTTTTGGGATGGTTGAGGTGGGTGGGAAGATAATGGTTGAAGAAATGTATGAaggtaataataattattgttgtGAGAAAAATAGTTATAATGGGATTGTTGTGGATTGCAATTGTGGGACAAAAGAAGATGATGGAGAGAGAATGGTGTGTTGTGATATTTGTGAGACATGGCAGCATACAAGGTGTGTTCGAATTCCAAATGATGAACAAGTTCCTTCTATTTTTCTCTGCAAAAGGTGCGAGCAAGAAATTGTTATGTTCCCTTCCTTgccataa 1830 0.3956 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVEFKGPFRENVNALLEFAKLETKLGFGMPIWSFQLELHRHPPSHVFLFVIEEAIEASPNPHCNQCQYVELQGHMMQGVFHSNGFGHLLCVNGLETGSDLAGHQIMEFWDRLCTGLQARKVSLNDIAQKRGMELRLINGIAHSEPWFGKWGYKFGRGCFGVTQSTFQKAIEAIRSIPLYLLIHHINGNSSYHDIPMIFSRYQTLSNQSIVTLGDLFHFMLELKSRLPQGENFIDSSHNTGILFEPNCRWSPKRIEMATRVIVEALKRAEFRWISRQEVRDAARSYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVFPSHHHLQEDRIIKDRYKITRAQVMKDMFYLYKYILKDPKPTQGSILSAIPLAARIILDTKYLIKEYFGELPFQVDLGLEGKLSVFCTIMLRNNYNNNDPNEASPIMPPYECITLKSNATMNELKVEVERNFREIYWGLRSFCGDSIKDLEIANWNDMVFGMVEVGGKIMVEEMYEGNNNYCCEKNSYNGIVVDCNCGTKEDDGERMVCCDICETWQHTRCVRIPNDEQVPSIFLCKRCEQEIVMFPSLP 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0283 609 CDD PHD_MMD1_like 553 598 - -
Sto2g0283 609 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 609 - -
Sto2g0283 609 SMART PHD_3 553 599 IPR001965 -
Sto2g0283 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 606 IPR013083 -
Sto2g0283 609 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 609 - -
Sto2g0283 609 Pfam PHD-finger 554 600 IPR019787 -
Sto2g0283 609 SUPERFAMILY FYVE/PHD zinc finger 546 601 IPR011011 -
Sto2g0283 609 ProSitePatterns Zinc finger PHD-type signature. 554 598 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0283 Sto-Chr2 2400871 2404080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0283 10 609 PHD Transcription Factor Family AT5G22260 49.335 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto2g0283 PHD 1.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0283 - - gmx:100780210 887.871