Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0256 ATGAAACGCCCAATCGATGACATCGCTGTGCCATTAGCTTCTTCGGCTTCGAAGCCAGTGTTCTTAACCAAAGCTCAGCGCGAGCAGTTGGCACTTCAGCGCCGCCAAGAAGAAATTGCCGAACAAAGACGCCGCCAGGAACAGCTGCTTTCTCGGAACCGTCCCTCCTCCGATCCGGCTACAGATTCTAAACCCTCCGATTCGGACCGCCGAGAGCGCGACCGTGATCGGGACCGGGATAGAGACCGCGATAGGGATAGGGATAGGGATAGAGAGCGGGCTCGCGATCGGGACCGGGAAACAGAACGGCGGAACCGGGAGAGGGAGCGTGAAGAGGAGGCTAAGGCTCGTGAGCGTGCGCGGTTGGAGAAATTGGCGGAGCGTGAGCGTGAGAAAGAGCTTGATGCGATTAAGGAGCAGTATCTGGGTTCCAAGAAGCCCAAAAAGCGGGTTATTAAACCTAGTGAGAAGTTTCGGTTTTCATTCGACTGGGAGAACACGGAGGATACTTCTCGCGACATGAACGTGCTCTACCAGAACCCTCACGAGGCGCAGCTGCTGTTTGGGCGGGGCTTTCGTGCTGGTATGGACAGGCGCGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAACCCGAAGAGGCTGATGCACAGCGACGAAAGGAGGCTGCTGCTGATCTCTATGACACCTTTGATATGAGAGTGGACCGCCATTGGAGTGAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTCAGGGAGGACTTTAACATTTCTTACAAGGGTTCTAAAATTCCTCGCCCTATGCGTAGCTGGATTGAGAGTAAGTTGAGTTCTGAGTTATTGAAGGCTGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCTGCCATTCCGCTGGGTCTTCAGCAGCGAGATGTCATTGGCATTGCCGAGACCGGTTCTGGGAAGACTGCTGCATTTGTTCTTCCTATGTTGAGTTATATCACCAGGCTTCCCCCCATGAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCAGTTGTCATGGCACCTACCCGTGAGCTTGCCCAGCAGATTGAGGATGAAACTGTTAAGTTTGCCCAATATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGTTGTGAAATAGTAATTGCAACTCCTGGTCGATTGATTGATTGCTTGGAGCGACGATATGCTGTTCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTAATGGGTGTCTTAGATGCTATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACCACTTATATGTTCAGTGCCACCATGCCACCTGCTGTTGAGCGGCTTGCTAGGAAATACCTAAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATTTTACAAACTGCAAAGGTTGCTTGATGAACTTAATGACAAGACTGCTATTGTATTTGTTAATACGAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGATAGAGAAGGGTATCGTGTGACTACTTTGCATGGTGGGAAGTCACAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGGTATAATGTCCTTGTTGCAACTGATGTTGCAGGGCGTGGGATTGACATACCTGACGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAAATGTACACACATCGTATTGGGCGTACTGGTCGTGCTGGAAAGACAGGTGTTGCTACAACGTTCCTGACTCTTCAGGACACTGATGTCTTTTATGACCTCAAACAGATGCTCTTACAGAGTAATAGCCCTGTTCCTCCTGAATTGTCAAGACACGAGGCCTCAAAATTCAAGCCAGGATCTATTCCTGATAGACCGCCTAGAAGAAATGACACTGTATTTGCACACTAG 2124 0.4882 MKRPIDDIAVPLASSASKPVFLTKAQREQLALQRRQEEIAEQRRRQEQLLSRNRPSSDPATDSKPSDSDRRERDRDRDRDRDRDRDRDRDRERARDRDRETERRNREREREEEAKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWIESKLSSELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLLQSNSPVPPELSRHEASKFKPGSIPDRPPRRNDTVFAH 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0256 707 Gene3D - 248 517 IPR027417 -
Sto2g0256 707 PANTHER - 69 700 - -
Sto2g0256 707 Pfam Helicase conserved C-terminal domain 539 645 IPR001650 -
Sto2g0256 707 MobiDBLite consensus disorder prediction 682 707 - -
Sto2g0256 707 Coils Coil 199 225 - -
Sto2g0256 707 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 287 315 IPR014014 GO:0003724
Sto2g0256 707 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 69 700 - -
Sto2g0256 707 SMART helicmild6 564 645 IPR001650 -
Sto2g0256 707 Coils Coil 91 135 - -
Sto2g0256 707 CDD DEADc_DDX23 298 514 - -
Sto2g0256 707 MobiDBLite consensus disorder prediction 673 707 - -
Sto2g0256 707 MobiDBLite consensus disorder prediction 63 123 - -
Sto2g0256 707 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 442 450 IPR000629 -
Sto2g0256 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 666 IPR027417 -
Sto2g0256 707 MobiDBLite consensus disorder prediction 33 51 - -
Sto2g0256 707 CDD SF2_C_DEAD 525 654 - -
Sto2g0256 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 513 IPR014001 -
Sto2g0256 707 Pfam DEAD/DEAH box helicase 312 502 IPR011545 GO:0003676|GO:0005524
Sto2g0256 707 Coils Coil 22 52 - -
Sto2g0256 707 MobiDBLite consensus disorder prediction 33 123 - -
Sto2g0256 707 MobiDBLite consensus disorder prediction 204 235 - -
Sto2g0256 707 Gene3D - 518 705 IPR027417 -
Sto2g0256 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 684 IPR001650 -
Sto2g0256 707 SMART ultradead3 306 528 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0256 Sto-Chr2 2194987 2197206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0256 285 667 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.60e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0256 K12858 - gmx:100799264 1125.92