Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0213 ATGGGAAACACAGTTGGTAAGTACTTTTGCTTCCCTTCTTCAACCAGCAACAAACACTGCAAGATTCTTAAAAACTCCAAAAACTCCTCCGAAACAGAACAGCAGCAAAAtcttcaacaacaacaattttTTCATCGCTACACTTACAGCAACGAATTATCGCCGCCATTAATACTGACGTGCGAGATCTGCATCGAAGAGAAGCACATAGGGAAGTTCTTCAACGCAAAGAATTGCACCCACTTCTACTGCATTGAGTGCATAGTGAAGTACATAGAATCCAAGCTCCAAGACAACGTGCCGATCCTCGCGTGCCCGCGACCAAACTGTGACGGAATTCTAGAACCTTCCTATTGTAGGGCAATACTGCCCTACAAGGTGTTCATAAGGTGGGAGAAGGCTCTGTGTGAGCAAGGGATTCCTGAGAATCTCAAGTTTTATTGTCCCTTCAAAGATTGCTCTGCCCTTTTGatcaatgataataataataataatgtgattATAACATATAGTATTTGTCCTCACTGTGGGAGGGACATTTGTGTAAATTGTAAGGCTCCTTGGCATATAGGATTTGAGTGTGTGAGATTTGAGAGATTGAAGCACAATGAGGAAGCATTGATGATGGATCTTGCTAAGAGAAGCAAGTGGAGAAGGTGTCCAAATTGCAAGCACTATGTTGAGAAGAGAAACGGGTGTGATTTTATCAAGTGCAGGTGTAAGCATTTGTTTTGTTATAAGTGTGGACAGAGCATAATTAAGACTTGTCCACATACTTGTTCAAGGAAGCAGTGA 795 0.4025 MGNTVGKYFCFPSSTSNKHCKILKNSKNSSETEQQQNLQQQQFFHRYTYSNELSPPLILTCEICIEEKHIGKFFNAKNCTHFYCIECIVKYIESKLQDNVPILACPRPNCDGILEPSYCRAILPYKVFIRWEKALCEQGIPENLKFYCPFKDCSALLINDNNNNNVIITYSICPHCGRDICVNCKAPWHIGFECVRFERLKHNEEALMMDLAKRSKWRRCPNCKHYVEKRNGCDFIKCRCKHLFCYKCGQSIIKTCPHTCSRKQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0213 264 Pfam IBR domain, a half RING-finger domain 133 194 IPR002867 -
Sto2g0213 264 Pfam IBR domain, a half RING-finger domain 210 252 IPR002867 -
Sto2g0213 264 SUPERFAMILY RING/U-box 59 138 - -
Sto2g0213 264 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 254 IPR031127 GO:0004842|GO:0016567
Sto2g0213 264 SMART ibrneu5 200 260 IPR002867 -
Sto2g0213 264 SMART ibrneu5 129 194 IPR002867 -
Sto2g0213 264 SUPERFAMILY RING/U-box 145 199 - -
Sto2g0213 264 ProSiteProfiles TRIAD supradomain profile. 57 264 IPR044066 -
Sto2g0213 264 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Sto2g0213 264 Gene3D - 193 264 - -
Sto2g0213 264 SUPERFAMILY RING/U-box 203 258 - -
Sto2g0213 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 144 IPR013083 -
Sto2g0213 264 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 21 254 - -
Sto2g0213 264 ProSitePatterns Zinc finger RING-type signature. 79 88 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0213 Sto-Chr2 1783291 1784786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0213 60 249 C3H Transcription Factor Family AT2G19610 29.208 1.89e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0213 K11975 - pvy:116125926 244.202