Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0180 ATGGGACGAGGAAAATTAGCCATGAAACTGATAGAGAAGGAAAAATCACGAAAGGCAACATATCATAAGAGAAAGAATGGAATAATGAAGAAAGCTCATGAACTCTCAACACTCTGTGGAATTGACTCTTGCTTGATCATCTATAGCCCTAACTCCAATAACCACCAACCAGAGACTTGGCCTCAAGATCCCatagagATACAACGGATTATCAGTAAGTACGAGGCTAAGATCGCCGAGAAAAGGCCGAAGAACTATGATGTCATTGAGTTCTTCAAGGACCGGAAGAACAAGGTTGAAGCAGAGACCTCCAAACTCCACAAGGAGAGGTTGAAGATGTTGTATCCCACATGGGACAACAGTTTCAACAACCTAGGAGAGGACCAGCTGAGGATGTTTGCTAATGCATTAGATGCCAAGATTGAAGGATGCAGAGAAAAGATTAACATGTTGAAGAAGAAGCGTTACTTGAAGGAAAAAGCAGTAGAATCAGTGGTTTCATCTAACAGAAGCCACCTCTGTTTCCTGCAGAACACATCTGAAACACAAGACTTTTCAGCTATAATGATGAAGGCACCACAGAATAGTGATGATAATAATGGGATGATGGAAGATTATTCTTCTTCTCTGTGCTATTACAATAATGGGGGTGTGCAGTTGGTGCAGCcacataattattattcttcttTGCAGAAATTCCCTTCACAGAACATTATGCAGTATCATGAAGCCAATTTGCAGGCACTCCCACCTCTGATGATTCAAGCAAATTATGGGTATCAGGATCTGCTTCAAGCTCATCAGCCGTACAACTATATGAACATGAAGAAGTAG 834 0.4041 MGRGKLAMKLIEKEKSRKATYHKRKNGIMKKAHELSTLCGIDSCLIIYSPNSNNHQPETWPQDPIEIQRIISKYEAKIAEKRPKNYDVIEFFKDRKNKVEAETSKLHKERLKMLYPTWDNSFNNLGEDQLRMFANALDAKIEGCREKINMLKKKRYLKEKAVESVVSSNRSHLCFLQNTSETQDFSAIMMKAPQNSDDNNGMMEDYSSSLCYYNNGGVQLVQPHNYYSSLQKFPSQNIMQYHEANLQALPPLMIQANYGYQDLLQAHQPYNYMNMKK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0180 277 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 213 - -
Sto2g0180 277 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Sto2g0180 277 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Sto2g0180 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677|GO:0046983
Sto2g0180 277 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Sto2g0180 277 PANTHER MADS BOX PROTEIN 3 213 - -
Sto2g0180 277 Coils Coil 134 154 - -
Sto2g0180 277 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Sto2g0180 277 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto2g0180 277 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto2g0180 277 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto2g0180 277 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0180 Sto-Chr2 1488733 1490186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0180 1 142 Type I MADS-box Gene Family AT5G55690 35.616 5.02e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto2g0180 SRF-TF 8.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0180 - - adu:107470541 209.534