Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0168 ATGGGAAgcagagagatagagagagattCATCCTCGTCTTCCTCAATTTCGCCGGCAAGAAACGTGAAGAACAAGGCCATAATTGCTCAGTACAGTGCTGATGCTGGGATTTTAGCTGAGTATGAGCAATCAGGCGCGTCTGGCAAGTCCTTCGATTACTCGAGGTCGGTTCTTAATCCGGCGCAATCAGTGCCAGAAGAGAAAATGATAGCTTACTTGTCAAGAATCCAAAGAGGTGGTCACGTTCAACCCTTTGGTTGTATGCTTGCCATTGAAGAGCTCACTTTCAGAATCATTGGATACAGTGAGAATTGCTTTGAAATGCTGGGTTTAGCATTAGACAGGAAATTTGATTCCAAGCAATTTGTGAGTTTGATTGGAGTTGATGCTACAAAGCTCTTCACTCCTTCTTCAGGGGCTTCTCTTGCAAAAGCTTCCACATCAAGGGAACTTTCACTTCTGAATCCAATTTGGGTCTACACCAGAACAACCCAAAAGCCATTTTATGCCATAATGCATAGGATAGATGTTGGTATTGTGATTGATTTGGAGCCGGCAAGGTCAACTGATCATGCATTGTCTCTCGCCGGTGCTGTACAATCCCAGAAGCTCGCGGTACGAGCAATTTCGAGGTTGCAATCCCTTCCTGGGGGTGATATTGGAGTTTTATGTGATACTGTTGTTGAAGAAGTTCAAAAGCTTACTGGGTATGATAGGGTCATGGTATATAAGTTCCATAAGGATGATCATGGTGAGGTTGTGTCAGAGATTAGAAGGTTAGATTTAGAACCTTATTTGGGTTTGCATTACCCTGCTACAGATATCCCTCAAGCTGCTCGCTTCTTGTTCAAGCAAAATAGGGTCAGGATGATCTGTGATTGCTATGCAAAACCAGTCAAGGTGATTCAAAGTGAAGAGTTAAGGCAGCCTCTTTGTTTGGTCAATTCAACCCTTAGGTCACCACATGGATGTCACACACAGTACATGGCTAACATGGGCTCAGTTGCCTCTCTAGTGATGGCAGTTGTGGTTAATGGGAATGATGGCACAAAGCTTTGGGGTTTGCTGGTTTGTCACCACACGTCACCACGGTATGTTCCTTTTCCTCTACGCTATGCTTGTGAGTTCCTCATGCAGGCTTTTGGGTTGCAACTTTATATGGAGATGCAATTGGCATCACAAATGGAAGAGAAGAGAATTCTAAGAACACAAACCTTACTTTGTGACATGCTCCTCCGTGATGCTCCATTAGGTATTGTTACTCAATCTCCTAGCATAATGGATCTTGTGAAGTGTGATGGTGCTGCATTGTTATATGGAGGAAAATGTTGGTTGTTAGGCACAACCCCAATTGAAGCACAAGTGAAGGACATTGCAGAATGGCTACTTACTAATCATGGGGACTCGACCGGTTTGAGCACCGATAGCTTGGCGGATGCCGGTTATCCGGGTGCTGCTTCACTTGGGGATGCAGTTTGTGGCATGGCAACAGCAAAAATCAATTCTAGAGATTTCTTGTTCTGGTTCAGGTCTCACACAGCTAAAGAAATGAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGGGGGAAAATGAACCCAAGATTTTCATTCAAAGCATTTCTTGAAGTAGTCAAAAGCAAAAGTCTACCATGGGAAGTGTCAGAAATCAATGCTATTCACTCATTGCAGCTTATAATGAGAGATTCATCCCAAGAAGTAACAGAGAATAGTAGTCCTAAGATTCTAACTCCTGTAGAGCAAAGGGCCACTGAAATGGAAGGAGCTGAGATAAATGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTGATTGAAACAGCAACAGTTCCAATTTTCGGGGTTGATTCAGCTGGTCTAGTCAATGGATGGAATGCCAAAATTGCTGAACTGACAGGTCTTGATTCTAATGAAGCTATTGGAAAATCATTAGTAAATGAAGTTGTCGTTGAGGAATCCAGAGAAACTGTCCAAAATATTATGACAAGAGCATTGCAAGGTGAAGAGGACAAAAATATTGAGTTGAAACTAAGACACTTTGGGCTTCAGCAGCAAAAATCAGTTGTATATATTGTAGCTAATGCTTGCACAAGTAGGGATTACACAAATTCTGTTGTTGGGGTATGCTTTGTGGGACAAGATATCACTTATGAGAAATATGTTATGGACAAATTCATCAAGCTCGAAGGTGATTACAAAGCAATCATTCAGAGTCTCAACCCATTAATTCCACCCATTTTTGCTTCTGATGAGAATGCCTGCTGCTCAGAATGGAATGCTGCCATGGAAAGGATAACTGGTTGGAAGAGAGATGAAGTTTTAGAAAAAATGCTACCTGGGGAGATCTTTGGAGATCTATGTCGGTTAACAGGTCAAGAGACATTGACTAAGTTTATGATTTTGTTGTATCGAGGAATCAGTGGTCAAGATTCTGAGAAGTTTCCATTTggattttttaatagaaaagggGAATTGGTAGAGGTTTACTTAACAGCAAACAAGAGGATTGATGCAGGTGGAAATATAATTGGCTGTTTCTGCTTCTTGCAGATTGTGTCACCTGACCTACATCAGCCCCCATCAGAAGAAAAAATGCCACAATGCAAGGGAAAGTTTTCTGAATTTATGGAATTAGGTTATATACTACAAGAGATGAAGAATCCTTTAAATGGTTTGCGTTTCACACACAAGCTTTTGGAAAATACTGCTGTCTCAGAAAATCAGAAACAGTTTCTTGACACCAGTGATGCTTGTGAAAGACAAATCATGGCAATTATTGAAGACACAGATTTAGGAAGTATTGATGAAGGCACTTTGCAGCTAAAAACGGAGGAATTTCTTCTGGGAAATATTTTAGATGCCATTTTCAGTCAAGTCATGATCTTGATAAGTGGAAGAAACTTGCAGCTTATTCATGAAATTCCTGTGGAAATCAAAATGCTTACTTTGTTCGGCGATCAAATTAGGCTTCAGATGGTCTTGTCTGACTTTTTGCTTAATGTGGTCAGCCATACAACATCTCCCAATGGCTGGGTAGAAATAAAGATTTCACCTGGTCTGAAGATAATACAAGATGGCAATGAGTTAATACATCTTCAGTTCAGAATGATCCATACTGGTCAAGGTCTTCCTCCTGAGGTTCTTCAGGATATGTTTGAAGAAGGGAACCAATGGACTACACAGGAAGCTATCACTATAGCGTTCGTTGATATTGAGAACTCCCAATCCAAGTCTCCACCCTCAGACGCATCTTTTCGGATAGCACAGGTGATTTTGCCCTTTTTGCTTTGTTCCGATAATATAGCTTTAAAAATGTCAGATCTCTTACATTACGTTTCTCCAGTTACTTGTTTTTCACTCCTGGGAGTGAGGCTTGAGACTGCGTTGTTTCGCAGAAGACAAGATTTAAGGTTGCGAGATATTTTTCTTTTCGCAGTTGCTGTAGGCAAGATTGTGAATTCCACCCAAGAATCTCTTGATAACAAATATGACATTGTTGATTCTCTGCCTCATTTTAGCATCAGAAGAACTGCTGGAAGACTAACCCAGATGCCATATGTGATGAACAACAGCAGCAAGGAAAAAGAAGCAGATGTGGCTGCATTGGGGCTTTCTGTTGGTTCTAGACCATACACTGTTGATCCACCACCAGGCATTGTCGTGCTTGGAGTTGTTGGAGGCATAGGACTTGGTGGAGTTGTGGCAGTTCCCATTACCTGCAACAACGATAAATGTCATTTCCTTTGGAAAGAAGTAGAATTGCAGCTTCTGCCTAGAATGGCAACAACAAATGATCTATGTTTGATGTTGATGGCATTCTTACTTGGGTCAGTGCTTGTAAGTGTTGCTGTTCCTCCAAACACACAGCTTGTAGTTGGGGTAGGGGTTGTGTCTGGGACAGTTGGGGTAGGGGTTGTGTCTGGGATTGTTGGGGTTTGCCCTGTTGTGTCCGGAACATCATCCAATTGTGTACCAAATTCAGATGATGTGGAGATATCCTGGTGTTCTTCATCTATAAGCAATTTGGCTGTACCTAGACCTGGAAAAGAAACCAAGTAA 4089 0.4138 MGSREIERDSSSSSSISPARNVKNKAIIAQYSADAGILAEYEQSGASGKSFDYSRSVLNPAQSVPEEKMIAYLSRIQRGGHVQPFGCMLAIEELTFRIIGYSENCFEMLGLALDRKFDSKQFVSLIGVDATKLFTPSSGASLAKASTSRELSLLNPIWVYTRTTQKPFYAIMHRIDVGIVIDLEPARSTDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRLDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCYAKPVKVIQSEELRQPLCLVNSTLRSPHGCHTQYMANMGSVASLVMAVVVNGNDGTKLWGLLVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMEMQLASQMEEKRILRTQTLLCDMLLRDAPLGIVTQSPSIMDLVKCDGAALLYGGKCWLLGTTPIEAQVKDIAEWLLTNHGDSTGLSTDSLADAGYPGAASLGDAVCGMATAKINSRDFLFWFRSHTAKEMKWGGAKHHPEDKDDGGKMNPRFSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSSQEVTENSSPKILTPVEQRATEMEGAEINELSSVAFEMVRLIETATVPIFGVDSAGLVNGWNAKIAELTGLDSNEAIGKSLVNEVVVEESRETVQNIMTRALQGEEDKNIELKLRHFGLQQQKSVVYIVANACTSRDYTNSVVGVCFVGQDITYEKYVMDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERITGWKRDEVLEKMLPGEIFGDLCRLTGQETLTKFMILLYRGISGQDSEKFPFGFFNRKGELVEVYLTANKRIDAGGNIIGCFCFLQIVSPDLHQPPSEEKMPQCKGKFSEFMELGYILQEMKNPLNGLRFTHKLLENTAVSENQKQFLDTSDACERQIMAIIEDTDLGSIDEGTLQLKTEEFLLGNILDAIFSQVMILISGRNLQLIHEIPVEIKMLTLFGDQIRLQMVLSDFLLNVVSHTTSPNGWVEIKISPGLKIIQDGNELIHLQFRMIHTGQGLPPEVLQDMFEEGNQWTTQEAITIAFVDIENSQSKSPPSDASFRIAQVILPFLLCSDNIALKMSDLLHYVSPVTCFSLLGVRLETALFRRRQDLRLRDIFLFAVAVGKIVNSTQESLDNKYDIVDSLPHFSIRRTAGRLTQMPYVMNNSSKEKEADVAALGLSVGSRPYTVDPPPGIVVLGVVGGIGLGGVVAVPITCNNDKCHFLWKEVELQLLPRMATTNDLCLMLMAFLLGSVLVSVAVPPNTQLVVGVGVVSGTVGVGVVSGIVGVCPVVSGTSSNCVPNSDDVEISWCSSSISNLAVPRPGKETK 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0168 1362 SUPERFAMILY PYP-like sensor domain (PAS domain) 755 857 IPR035965 -
Sto2g0168 1362 CDD PAS 752 860 IPR000014 -
Sto2g0168 1362 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Sto2g0168 1362 PANTHER PHYTOCHROME E 24 1077 - -
Sto2g0168 1362 Pfam PAS fold 71 186 IPR013654 GO:0006355
Sto2g0168 1362 Gene3D PAS domain 609 729 - -
Sto2g0168 1362 ProSiteProfiles PAS repeat profile. 607 678 IPR000014 -
Sto2g0168 1362 SUPERFAMILY GAF domain-like 397 578 - -
Sto2g0168 1362 SUPERFAMILY PYP-like sensor domain (PAS domain) 613 721 IPR035965 -
Sto2g0168 1362 Gene3D PAS domain 754 865 - -
Sto2g0168 1362 Pfam His Kinase A (phospho-acceptor) domain 890 947 IPR003661 GO:0000155|GO:0007165
Sto2g0168 1362 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Sto2g0168 1362 Gene3D - 200 550 IPR029016 -
Sto2g0168 1362 TIGRFAM sensory_box: PAS domain S-box protein 614 729 IPR000014 -
Sto2g0168 1362 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 188 IPR035965 -
Sto2g0168 1362 SMART gaf_1 219 399 IPR003018 GO:0005515
Sto2g0168 1362 ProSiteProfiles Histidine kinase domain profile. 890 1065 IPR005467 -
Sto2g0168 1362 CDD PAS 618 725 IPR000014 -
Sto2g0168 1362 Gene3D - 926 1076 IPR036890 -
Sto2g0168 1362 SMART pas_2 740 810 IPR000014 -
Sto2g0168 1362 SMART pas_2 609 676 IPR000014 -
Sto2g0168 1362 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 1077 - -
Sto2g0168 1362 CDD HisKA 888 938 IPR003661 GO:0000155|GO:0007165
Sto2g0168 1362 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Sto2g0168 1362 Pfam GAF domain 219 388 IPR003018 GO:0005515
Sto2g0168 1362 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 610 626 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 629 644 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Sto2g0168 1362 Gene3D - 394 567 IPR043150 -
Sto2g0168 1362 Pfam PAS fold 741 860 IPR013767 GO:0006355
Sto2g0168 1362 Pfam PAS fold 610 725 IPR013767 GO:0006355
Sto2g0168 1362 Gene3D PAS domain 75 322 - -
Sto2g0168 1362 SUPERFAMILY GAF domain-like 199 385 - -
Sto2g0168 1362 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 948 1068 IPR036890 -
Sto2g0168 1362 ProSiteProfiles PAS repeat profile. 741 819 IPR000014 -
Sto2g0168 1362 SMART HisKA_10 883 947 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0168 Sto-Chr2 1411931 1420463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0168 11 1076 Histidine Kinase Gene Family AT4G18130 64.000 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0168 K12123 - gmx:100808192 1719.13