Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0144 ATGGCGTTCCCAAACCAAGGCATTTCAGATTCTTCTCCccaaagaaagatgggaagAGGGAAGATTGAGATCAAAAGGATTGAGAATACCACAAATCGCCAAGTCACTTTCTGTAAACGCAGAAATGGACTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCACTCGTGGCCGCCTCTATGAATATGCTAATAACagTGTGAAAGCGACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTACTGGTGCTGGTTCTGCCTCTGAAGCTAATGCTCAGTATTATCAGCAAGAAGCTGCCAAACTGCGTGCTCAAATTAGTAACCTGCGCAACAACAACAGGCAAATGATGGGTGAGACTTTGGCTAGTTTGAATGCCAAGGAGCTCAGAAACTTGGAGACTAAGTTAGAAAAAGGGATTAGTAGAATTCGTTCcaaaaagGAGATAGATTTGCACAATAACAACCAGCTTCTTCGAGCCAAGATTGCTGAAAGTGAGAGGAACCAGCAACAGCAACAACAAAACATGAATGTGTTGCCTGCAGCAACTAACTACGAAGCAATGCAATCTCATCAGCAGCAGCATCACCAATTCGATTCTCGAGGTAATGTTATTATGGTTGAGATGGAGATGCATGGATTGAGACTTAATTAA 687 0.4148 MAFPNQGISDSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSTGAGSASEANAQYYQQEAAKLRAQISNLRNNNRQMMGETLASLNAKELRNLETKLEKGISRIRSKKEIDLHNNNQLLRAKIAESERNQQQQQQNMNVLPAATNYEAMQSHQQQHHQFDSRGNVIMVEMEMHGLRLN 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0144 228 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 17 219 - -
Sto2g0144 228 Coils Coil 166 186 - -
Sto2g0144 228 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Sto2g0144 228 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Sto2g0144 228 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Sto2g0144 228 ProSiteProfiles K-box domain profile. 103 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto2g0144 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 219 - -
Sto2g0144 228 Pfam K-box region 100 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto2g0144 228 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Sto2g0144 228 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Sto2g0144 228 Coils Coil 103 130 - -
Sto2g0144 228 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Sto2g0144 228 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Sto2g0144 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Sto2g0144 228 MobiDBLite consensus disorder prediction 1 21 - -
Sto2g0144 228 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Sto2g0144 228 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0144 Sto-Chr2 1224631 1232511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0144 10 207 MADS-box Gene Family AT3G58780 63.850 4.53e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto2g0144 K-box 4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0144 K09264 - gmx:732595 308.916