Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0117 ATGCAAAACTCTCCTCTTCcgtcattttggttctttatttttctcatttcctcTATTCTCATTAGAACCGACGGAGGTGAGGCCACAAATGGAGACAATAAAGTTATACGCATTGGAGCAATTGTTGATTCTAACTCTCGTATTGGTAAAGAACAGCAAATAGCTATGGAAATTGCAGCtcaaaattacaataatacATCAAACACTCACAAGCTGGCTCTCTATTTCCAGAACCCCACAAATGAGCCCTTCACAACAACTTCTCTTGCTGAAGAGTTGATTGAAAAGCAGAAAGTGCAAGTGATTATAGGGACTCAAACATGGCAAGAAGCAACTATAATGGCTGGAATTGGAAGCAAAACTCAAGTTCCAATCATATCCTTTGCATCACCTGCAATTACTCCACCATTGACACCAAAACGCTGGCCTTATCTCATAAGACTATCCAACAATGTCACTGCACATATAAACTGCATTGCAGATATAGTCCATTCTTTCACTTGGCAAAGAGTAATAGCCATTTATGAAGATGATGCCTATGGTGGTGGAGACTATGGCATGCTTCAACTCCTATCCGAGTCTCTCCAACACTTCGGTTCAATGATCGAGTACCGGTTAGCCCTTCCAccactttctcttctctcagatCCATCCATGTTGATTCAACAAGAGCTTGTGAAGTTGGTAAAGCAAACACAATCTCGGGTTTTCATTGTTCTGCACTCATCTTTAGAAATGGTGAATTTTTTGTTCAGAGAAGCCTCACAAATAGGACTTGTGGATCGAGATTCGGCTTGGATAATTCCAGAGAGCATAACAAATGTGATGGACTCTGTGGATAAATCTGGTATTTCCTACATGGAAGGATCTTTAGGAATCAAGACTTACTACGTTGAAAATAGCAGTCAGTACAAAGATTTTCAAGGTCAATTCAGGAGAAGATTTCGTGCCAAGAATCCTGAGGAAGATAATATCAATCCTGGGTTTTATGCTTTGCAAGCACATGACAGCATCAAAATTGTGATTCAAGCATTAGAAAAAATGGCAAGCACAAGATCAGATTTACTAAGAGAAATACTTTCTAGCAATTTTCATGGTTTAAGTGGAGACATTCATTTTGAAGAAGGCCAACTCTTGCAGAATCCTACCTTAAGGGTAGTAAATGTAGTTGGGAAGAGTTATAAAGAAATAGAGTTTTGGACTCAAGAAGTTGGGTTCTTTACTGGTGATGATGCTAAGTCTAGTACTCAAGGTTTGGGTGGTGTAGTACAATGGCCTGGGAATTTGCCGAGGAATCCAAAAGGGTGGAAAATGCCTATTAAACAAAAGCCAATGAGAATTGCAATTCCTGGAAGAACTGCATTTTCCAAATTTGTGAAGGTTGTGTATGGGGAGAATCCAGCTGAGAATGAATATACTGGGTTCTGTATTGAAATTTTCAAAATGGTGCTTGACCTTTTGGAGTATGATCTACCCTATGAGTTTCATCCTCTCAATGTAACTTACCCAGATCTGGTTCAACTAGTTTACAACAAGGTAACATCTCTTTGTTTCAATTAA 1560 0.3756 MQNSPLPSFWFFIFLISSILIRTDGGEATNGDNKVIRIGAIVDSNSRIGKEQQIAMEIAAQNYNNTSNTHKLALYFQNPTNEPFTTTSLAEELIEKQKVQVIIGTQTWQEATIMAGIGSKTQVPIISFASPAITPPLTPKRWPYLIRLSNNVTAHINCIADIVHSFTWQRVIAIYEDDAYGGGDYGMLQLLSESLQHFGSMIEYRLALPPLSLLSDPSMLIQQELVKLVKQTQSRVFIVLHSSLEMVNFLFREASQIGLVDRDSAWIIPESITNVMDSVDKSGISYMEGSLGIKTYYVENSSQYKDFQGQFRRRFRAKNPEEDNINPGFYALQAHDSIKIVIQALEKMASTRSDLLREILSSNFHGLSGDIHFEEGQLLQNPTLRVVNVVGKSYKEIEFWTQEVGFFTGDDAKSSTQGLGGVVQWPGNLPRNPKGWKMPIKQKPMRIAIPGRTAFSKFVKVVYGENPAENEYTGFCIEIFKMVLDLLEYDLPYEFHPLNVTYPDLVQLVYNKVTSLCFN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0117 519 PANTHER GLUTAMATE RECEPTOR 3.4 17 512 - -
Sto2g0117 519 CDD PBP1_GABAb_receptor_plant 37 407 IPR044440 -
Sto2g0117 519 SUPERFAMILY Periplasmic binding protein-like I 33 436 IPR028082 -
Sto2g0117 519 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 512 - -
Sto2g0117 519 Pfam Receptor family ligand binding region 53 390 IPR001828 -
Sto2g0117 519 Gene3D - 438 518 - -
Sto2g0117 519 Gene3D - 31 156 - -
Sto2g0117 519 SUPERFAMILY Periplasmic binding protein-like II 422 511 - -
Sto2g0117 519 Gene3D - 157 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0117 Sto-Chr2 1030632 1032684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0117 36 512 Ion Channels AT2G29100 30.874 3.04e-60 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0117 - - aprc:113859865 633.254