Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0114 ATGACAAGGGCTGTGCGCAATAGGATACTCAAAGATGCGAACGGTGATATTAGTGATCATCTACGCAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCTATTCTTGCTGATAGGTCACTCATGAGGGACCTCGTTGTACTACAGAGGTCACGCTCTTTGAGGGACCCTTCTGCAAGTCCTCCTTCATGGCATTCACCTTCTATAGTTGAGGTGCTTTCCAAAAGGGTTGAAAATGATGCCGTGGTCCAAGAGGGAAGAAGGTCCGTAGGAATTGAGCGCCGAAAAGAAGGAAGGAGGTTATCAGGAACCTCTCCGCCTGTGGTTAGTATAGGTACATCCAAAGTTGCGCCAGGTGAAGTGAGCCGGGGTAATGATGGAGGTCCAGCAAGTAGAGAGCGTAGTAGCAGGAGTGGAATTGGGGATGGGATGAAAGTTGGAAGAGAAGAATCTGGTCGGAAGAGTGACAGACCTGATTATTTGGGTCATAGTGAAGAGCAACTTCTCAATCAACTTGGGAAAGATTTGGCTGAAGACGTTCTTTCGAGGCACTCTGAatcaaaagagagaaagagcaaACAAAGGGGAAAAAGTGTTCGAGATGTTCCAGTTAAGACCCTTTCTGAACAGCTGAATGATGTTCCTCTAGAAAGTGATGATTTGGCATCCTCAAACATTAATGTTCGTGGAAGGTTTCCTAGGCAGGAGAAAATTATTGAGGAGCCAGAACCCAGCATACGTGGTCATGGCAATGGAATGAACAGGGTAAAAAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGCTTCTGTGGCATCTAGAGATATTGGAGCTGAGAAAGAACTTTCTGTTGCTTCGAACTCATTAGCCCATGGTTCAGCCCACCATAAATATCACATGGAAGAGGCAGATGACTATGCAGATGAAAATGTCACCAGGGCACCCAAAAATGGGTGTGGCATTCCTTGGAATTGGTCAAGGATTCATCACAGAGGTAAAACATTCCTTGATATGGCTGGAAGAAGTTTATCTTGTGGTTTATCTGACTCGAGGCTAAAGAAAGGAGCAATGGATGCCAATGGAAGAAATATTCCTGACATACCTGTTGCATCTGACCAATCAAGCTCATTTACTAGGTCTGATGCAGAAGCACTACCTTTACTAGTTGAGGCATCTGGATCTCAGGGAAGCACTGAGAATGCTTGTTGGGGGCATGACTATTCTGGAGAACTTGGTATTTTTGCTGACAATTTATTCAAGCATGATATTGATTCTGACCTCGTTTCTGAAGCTAGATCTGGAGATCAGCGTAAGTTGAGAGGGAATCGCTATAGCAGGCACCAGAGCTTAACCCAAAAATATTTGCCACGAACCTTCAGAGATTTGGTTGGCCAAAATTTGGTCGCACAAGCTCTCTCAAATGCAGTGATGAGAAGGAAAGTTGGATTTTTGTATGTGTTTTATGGACCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATTTTTGCTAGAGCTTTAAATTGTCATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTCTTGCATAGCACATGACATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGACAACATGATTATTTCCCAGCTTGCATCACAGTACAGAGTGTTCATTTTTGATGACTGTGATACTCTGTCAGCTGATTGCTGGAGTGCCATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATACTTGTTAGTTCAAGTCTTGATGGATTGCCTCATATAATCATATCCAGGTGTCAGAAATTCTTTTTCCCAAAGCTGAAGGATTTAGACATTATGTATACATTGCAGCGGATTGCAACCAAAGAAGGTCTAGAAATTGACAGGGATGCCCTGAAACTTATTGTATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAGCTTAGTTTGCTTGGGCAGAGAATATCAGTTCCTCTTGTTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTCGATCTGCTTGACTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTGATTATGGAAACTGGCGTTGAGCCTTTAGCTTTAATGTCACAGCTTGCTACAGTCATTACTGATATACTTGCTGGGACCTATGATTTCACAAGAGAAAGGCGGAGAAGGAAGTTTTTTAGGAGACAACCATTATCAAAAGAAGACATGGAAAAGCTACGTCAAGCTTTGAAGACTTTATCCGAGGCTGAGAAGCAGTTGAGGATGTCAAATGACAAACTGACGTGGCTAACAGCTGCATTGCTTCAACTTGCTCCAGATCAGCAATATCTGTTGCCTACTTCATCTGATAATAGTTTCAATCATAGTCCCTTGGCCCTAAAGCCAACATCTTCACACGGTACTGATATGATTAGGATGAATGACTGGCAGATGTTTGGTAAAAACCGAAAAGGAATTGAAGAGATATGGTTGGAGGTCCTTGACAGGATTCAAGTTAATGGTCTGAAAGAGTTTTTATATCAAGAAGGAAAACTGATCTCTGTTAGTTTTGGTGCAGCTCCGACTGTGCAGCTATTGACTAGTTCCCAATTGACCAAATCTACTGCTGAGAAGTTCAGGGGTCATATCTTACAAGCCTTTGAATCCGTCCTTGGATCTTCTGTAACGTTAGAAATTAGAAGTGAATCAAATAAAGATGCAGGGTCAGGGTTTCAACTGCCTCTTATACTGCCAGCTGTTAGAGAAAGTTCGGCTCAGATTAGAGACTCAAGTGCAGAGAGCAAGAATAATGAGCAACAGGCTGATGTTAACAAAAAACCTATTGTGACTTCACACTTAGAAAGAAGGAAGCTTAGGGAACAAAATCCGAATCGAAGTATTGTAAGAAGCAAGGTATCCCTTGCTCATGTAATTCAGCAGGCTGAAGGACGTTCACAACGAAATGGGTGGTCAAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTTGAGCCAAGATCAAGGAGCTTGCTATGCTGGAAAGCATCAAGAGTAACACGCCGGAAGCTTTCACGTTTGAAAGTTAGAACACGAAAACCACATGCATTGCTGAACCTGGTCTCATGTGGGAAATGTCTGAGTACTAAATCTCCAAGGTAG 3258 0.4251 MTRAVRNRILKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIVEVLSKRVENDAVVQEGRRSVGIERRKEGRRLSGTSPPVVSIGTSKVAPGEVSRGNDGGPASRERSSRSGIGDGMKVGREESGRKSDRPDYLGHSEEQLLNQLGKDLAEDVLSRHSESKERKSKQRGKSVRDVPVKTLSEQLNDVPLESDDLASSNINVRGRFPRQEKIIEEPEPSIRGHGNGMNRVKRRKFRSARRARASVASRDIGAEKELSVASNSLAHGSAHHKYHMEEADDYADENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRLKKGAMDANGRNIPDIPVASDQSSSFTRSDAEALPLLVEASGSQGSTENACWGHDYSGELGIFADNLFKHDIDSDLVSEARSGDQRKLRGNRYSRHQSLTQKYLPRTFRDLVGQNLVAQALSNAVMRRKVGFLYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNFDFESIMDLLDNMIISQLASQYRVFIFDDCDTLSADCWSAISKVIDRAPRRVVFILVSSSLDGLPHIIISRCQKFFFPKLKDLDIMYTLQRIATKEGLEIDRDALKLIVSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTRERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPTSSDNSFNHSPLALKPTSSHGTDMIRMNDWQMFGKNRKGIEEIWLEVLDRIQVNGLKEFLYQEGKLISVSFGAAPTVQLLTSSQLTKSTAEKFRGHILQAFESVLGSSVTLEIRSESNKDAGSGFQLPLILPAVRESSAQIRDSSAESKNNEQQADVNKKPIVTSHLERRKLREQNPNRSIVRSKVSLAHVIQQAEGRSQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKVRTRKPHALLNLVSCGKCLSTKSPR 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0114 1085 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sto2g0114 1085 MobiDBLite consensus disorder prediction 188 213 - -
Sto2g0114 1085 MobiDBLite consensus disorder prediction 151 169 - -
Sto2g0114 1085 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 831 - -
Sto2g0114 1085 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 839 939 - -
Sto2g0114 1085 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 955 1052 - -
Sto2g0114 1085 MobiDBLite consensus disorder prediction 96 169 - -
Sto2g0114 1085 MobiDBLite consensus disorder prediction 188 210 - -
Sto2g0114 1085 Pfam DNA polymerase III, delta subunit 473 630 - -
Sto2g0114 1085 MobiDBLite consensus disorder prediction 953 973 - -
Sto2g0114 1085 CDD HLD_clamp_pol_III_gamma_tau 634 693 IPR045085 -
Sto2g0114 1085 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Sto2g0114 1085 CDD AAA 471 630 - -
Sto2g0114 1085 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Sto2g0114 1085 Gene3D - 633 693 - -
Sto2g0114 1085 Coils Coil 766 793 - -
Sto2g0114 1085 MobiDBLite consensus disorder prediction 260 274 - -
Sto2g0114 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Sto2g0114 1085 MobiDBLite consensus disorder prediction 953 977 - -
Sto2g0114 1085 MobiDBLite consensus disorder prediction 251 274 - -
Sto2g0114 1085 SMART AAA_5 489 630 IPR003593 -
Sto2g0114 1085 Gene3D - 448 627 IPR027417 -
Sto2g0114 1085 PANTHER PROTEIN STICHEL-LIKE 3 180 831 - -
Sto2g0114 1085 PANTHER PROTEIN STICHEL-LIKE 3 839 939 - -
Sto2g0114 1085 PANTHER PROTEIN STICHEL-LIKE 3 955 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0114 Sto-Chr2 1005636 1012395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0114 456 742 Core DNA Replication Machinery Family AT1G21690 22.917 3.59e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0114 - - rcu:8275186 1476.84