Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0050 ATGGAAATAAGCAGAGGTGAGGGAAAGAGGAGCTTGAGGTACAAGAAGGAGGATGAAGAAGTGGGGAGTGAGGTGGACGGCTGTGATTCTGATCTAAGCGCCGCGAAGCCGTATCACCGGCGCCATAAGGTTTGCGAGTACCATGCCAAGGATTCTTCTGTACTCATTTCTGGGATGCACCAACGCTTTTGCCAGCAATGTAGCAGGTTTCATGAAGTATCAGAATTTGATGAATCCAAAAGGAGTTGCAGAAGGCGTTTGGCAGGACATAATGAGAGGCGTCGGAAGATTGCATCTGATTAA 303 0.4818 MEISRGEGKRSLRYKKEDEEVGSEVDGCDSDLSAAKPYHRRHKVCEYHAKDSSVLISGMHQRFCQQCSRFHEVSEFDESKRSCRRRLAGHNERRRKIASD 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0050 100 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 24 98 - -
Sto2g0050 100 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 98 IPR044817 GO:0003677
Sto2g0050 100 Gene3D - 14 84 IPR036893 GO:0003677|GO:0005634
Sto2g0050 100 ProSiteProfiles Zinc finger SBP-type profile. 20 97 IPR004333 GO:0003677
Sto2g0050 100 Pfam SBP domain 24 96 IPR004333 GO:0003677
Sto2g0050 100 SUPERFAMILY SBT domain 24 98 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0050 Sto-Chr2 474285 476464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0050 24 100 SBP-box Gene Family AT2G33810 71.429 2.64e-38 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto2g0050 SBP 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0050 - - gmx:100817597 145.206