Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0035 ATGGCGGGTCGCTTCGGATTTTCTTCCTCCGCACCGTCGTCCATGATCGTCACCAACACGCCGTCGCAGGATCTCGCCCTCAGCAATCTTGCTTTCTGCTCCGCCTCCGATCTTCAGAAGTTCGCTGCTCCTGGCTCCAATGATCTCTTCCTTGCTTTGGTTGGCGATTCCTTGGTTTACTCTCTTGCATATCCTTTTCGAATTTTTCGTCcttgtattCTGATGCTTACTGCTCATGAGAGCATACGTAGTGGCCATATTGCGCTGAATTCCATTCAACGTCGGTGTGTTAAAGTTTCGGCTGCTGAATCCATATCTGTGAGCAGATTCATCCCACCAGACAACTTCAGCCTGGCGGTGTTAACGCTTGAATTGGACTTCATCAAAAGGGGAAGTAGAAGTGAACAGATTGATGCTGTTCTCCTGGCCAAGCAACTTAAAAAGAGATTTAGAAACCAGGTTATGACAGCAGGGCAGAAAGTATTATTTGAGTACCATGGAAATAATTATTACTTTTCAGTTAGTCAAGCTGTTGTTGAGGGAGAAGAAAAGTCTAATTCTCTTGAAAGAGGAATGATGTCAGATgacacatatattatttttgaaacatCACGTGAGACTGGAATTAAGATTATCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAGGAGTTTAATCTTCAATCCCTCGGTATTGGGGGGCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTTCCTCCTAGTGTGACATCTAAATTAGGGATTAAGCATGTGAAAGGGATGCTGCTTTATGGACCTCCTGGTACTGGAAAAACTTTAATGGCACGTCAAATAGGGAAAATTTTGAACGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTCTTGAGTAAATTTGTTGGAGAAACTGAAAAGAATGTGAGGGACCTCTTTGCTGATGCTGAACAGGATCAAAGGACCAAAGGTGACGAAAGCGATTTGCATGTCATCATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACACGGGATGGTACTGGAGTTCATGATAGTATTGTGAACCAACTTCTTACTAAGATAGATGGTGTGGAGTCACTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTTGATGAAGCTCTTCTAAGACCGGGGCGACTTGAAGTTCAGGTTGAGATAAGCCTTCCTGATGAAAATGGGCGATTGCAAATTCTCCAAATCCATACTAACAAGATGAAAGAGAATTCTTTCCTGGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTGGTGAAAAGTGCAGTCTCATATGCTTTAAATAGACAACTGAGTTTAGATGATCTGACGAAGCAAGTTGAGGAAGAGAATATCAAGGTAACAATGGAGGACTTTTTGAATGCCCTCCAAGAAGTTATTCCTGCATTTGGAGCTTCGACCGATGACCTTGAAAGATGCAGACTCCATGGTATGGTGGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCTATGCTACTTGTagagcaagtaaaagtgagtaAAGGAAGCCCGCTTGTTACTTGTCTTCTGGAGGGCACCAGTGGAAGTGGCAAAACAGCACTTGCAGCTACTGTTGGTATTGACAGCGATTTCCCATATGTGAAGATAGTTTCAGCTGAATCAATGATTGGTCTACACGAGAGCACTAAATGTGCAAAGATTATAAAGATTTTTGAGGATGCGTACAAGTCACCATTGAGTGTCATTGTTCTTGATGACATTGAGAGGTTATTGGAGTATGTGCCTATTGGTCCACGGTTTTCAAATTTGATTTCACAGACACTATTGGTCTTGCTCAAACGGCTTCCTCCAAAGGGAAAAAAACTCTTAGTTATTGGCACGACAAGTGAATTACTTTTCTTGGACTCAATTGGATTTTGTGATACTTTCTCTGTCACTTATCACGTTCCTACATTGAACACAAATGATGCAAAGAAGGTGCTAGAACAGTTGAATGTATTTGCTCCTGAAGACATTGATGCTGCGGCAGAGGCCTTGAATGATGTAAGCTTAGTTACCTCATTACTGGGCTTCATCTGTTTAATTGTCTCATTGATTCTGGAGATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCAGCCCAAGGAGAGCATGGTGGATCTGCAGAAGCAATATATTCTGGGAAAGAGAAGATTAAGATCTCTCACTTCTATGATTGCCTTCAGGATGTCGTCCGAGTGTAA 2337 0.4138 MAGRFGFSSSAPSSMIVTNTPSQDLALSNLAFCSASDLQKFAAPGSNDLFLALVGDSLVYSLAYPFRIFRPCILMLTAHESIRSGHIALNSIQRRCVKVSAAESISVSRFIPPDNFSLAVLTLELDFIKRGSRSEQIDAVLLAKQLKKRFRNQVMTAGQKVLFEYHGNNYYFSVSQAVVEGEEKSNSLERGMMSDDTYIIFETSRETGIKIINQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPSVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTKGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMEDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGTSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAKIIKIFEDAYKSPLSVIVLDDIERLLEYVPIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSELLFLDSIGFCDTFSVTYHVPTLNTNDAKKVLEQLNVFAPEDIDAAAEALNDVSLVTSLLGFICLIVSLILEMPIKKLYMLIEMAAQGEHGGSAEAIYSGKEKIKISHFYDCLQDVVRV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0035 778 SUPERFAMILY Cdc48 domain 2-like 113 216 IPR029067 -
Sto2g0035 778 Gene3D - 113 211 - -
Sto2g0035 778 Pfam AAA+ lid domain 438 493 IPR041569 -
Sto2g0035 778 Pfam ATPase family associated with various cellular activities (AAA) 552 661 IPR003959 GO:0005524|GO:0016887
Sto2g0035 778 Pfam ATPase family associated with various cellular activities (AAA) 271 411 IPR003959 GO:0005524|GO:0016887
Sto2g0035 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 711 IPR027417 -
Sto2g0035 778 Gene3D - 220 412 IPR027417 -
Sto2g0035 778 SMART AAA_5 267 414 IPR003593 -
Sto2g0035 778 SMART AAA_5 547 668 IPR003593 -
Sto2g0035 778 PANTHER VESICULAR-FUSION PROTEIN NSF 81 777 IPR039812 GO:0016887|GO:0035494
Sto2g0035 778 PANTHER VESICULAR-FUSION PROTEIN NSF 1 41 IPR039812 GO:0016887|GO:0035494
Sto2g0035 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 510 IPR027417 -
Sto2g0035 778 CDD AAA 541 667 - -
Sto2g0035 778 Pfam Cell division protein 48 (CDC48), domain 2 136 181 IPR004201 -
Sto2g0035 778 Gene3D - 413 500 - -
Sto2g0035 778 Gene3D - 10 110 - -
Sto2g0035 778 CDD AAA 269 412 - -
Sto2g0035 778 Gene3D - 509 680 IPR027417 -
Sto2g0035 778 PANTHER BNAA03G50350D PROTEIN 81 777 - -
Sto2g0035 778 PANTHER BNAA03G50350D PROTEIN 1 41 - -
Sto2g0035 778 SUPERFAMILY ADC-like 12 110 IPR009010 -
Sto2g0035 778 ProSitePatterns AAA-protein family signature. 382 400 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0035 Sto-Chr2 370396 380825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0035 262 478 Calmodulin-binding Proteins AT3G56690 38.914 8.67e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0035 K06027 - gmx:100779259 1271.91