Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0034 ATGGGGACACGGCCTCAGCAACCATGtcgagaagaagaggaggaggagctACTAGGTCGTGGAACAACACTTTCGGGCCAATCAATTTCAACAAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAAACAATGGCTACACCGGCTAGTGATAACACTTTTTTAAGATTAAACCATCTCGATATCCATGGTGACGATGCTGGATCCCAGGGAGCAGTTGGtagtaagaagaaaaagagaggccAACGTGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTACGCCAATTTAGCATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACCACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGACCCAGGCAATAGTATTTCATCTCCTGATCAGCAACAATATGATGAGAAGAACATCCGTAGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATAATTTCTAAGGATAAAAAGGAAATACAATGGAAAGGTCTGCCTCGTACTAGTCTGAATGATATTGAAGAATTAAAGACAGAGCGTCTTGGGCTCAAGAATAGGATTGAAAAGAAAGCAGCCTACTTGCAAGAACTGGAGGAACAATGTCTATTTGCTCACTCCTTGTCTTATTCCATCAAGTACATAGGTCTTCAGAACCTCATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGTGGAGGTGTAGCTTTACCTTTTATTCTAGTCCAGACTCGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCACTCCATTTGAGCTGCATGATGACAACTATGTTCTGAAGGCAATGAAATTTTGTCAGACACCACAAAATGATAATATGACGCACAATCTTACAGATGGAGGTGAAGGGTCTAGCATGTCAGGCTTGTATCAAGGGCAGGTTCCTCCTCTGGTTTCAAACCAACTGGTTAGAACTCCCACTTCACCACCTCTTCCTGGAATATTGAAGGCCAGAGTTAAGCATGAGCATTAA 1065 0.4113 MGTRPQQPCREEEEEELLGRGTTLSGQSISTSRSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVGSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSISSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLKNRIEKKAAYLQELEEQCLFAHSLSYSIKYIGLQNLIQRNEQLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCQTPQNDNMTHNLTDGGEGSSMSGLYQGQVPPLVSNQLVRTPTSPPLPGILKARVKHEH 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0034 354 MobiDBLite consensus disorder prediction 21 55 - -
Sto2g0034 354 PANTHER TRANSCRIPTION FACTOR DP 22 354 IPR015648 GO:0005667|GO:0051726
Sto2g0034 354 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Sto2g0034 354 PIRSF Txn_factor_DP 4 354 IPR015648 GO:0005667|GO:0051726
Sto2g0034 354 Gene3D - 86 178 IPR036388 -
Sto2g0034 354 Pfam Transcription factor DP 181 307 IPR014889 -
Sto2g0034 354 Gene3D Transcription factor DP 179 313 IPR038168 -
Sto2g0034 354 PANTHER TRANSCRIPTION FACTOR DP 22 354 - -
Sto2g0034 354 SMART DP_2 180 352 IPR014889 -
Sto2g0034 354 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Sto2g0034 354 SUPERFAMILY E2F-DP heterodimerization region 179 306 IPR037241 -
Sto2g0034 354 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Sto2g0034 354 Coils Coil 189 209 - -
Sto2g0034 354 CDD DP_DD 178 293 IPR014889 -
Sto2g0034 354 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0034 Sto-Chr2 360622 365567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0034 74 301 E2F-DP Transcription Factor Family AT5G02470 51.528 1.16e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sto2g0034 DP 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0034 K04683 - zju:107414839 582.408