Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0028 ATGGCATCGTCCCAAGTTGAATTCGCTGCTTCATCTTCACCATTTGGTTATCATCATCGAAATCGATGTAGCAATTTTAACCATTTCGTTAGAGACAATCAAATTAACAGCAAGAAGAATCTCAGAAAACTACGTTTTACACCCAAAAGAGAGCAACAAGACGATTCGTCAAACTGGAAAATTCTGGAGGATTCTAATTACAAGAAATCAAACTCAACCCCGCATTCCCCTCTTTCCTCTGACGACTCGGCTAAATCGTCAAATCTCGGGGCCTCATCACTGGTCCAAATCTGGGAAAAAAGATTGACAAGGTCAAATTACTCAGAAAGTAGCGATGATAATCAGGAATACAGTGAAAGTAATAAAACAGGATCGAGCGGTGAGAGTCAAAGTTCGTCACCGCAAGGGCAAGTGGgaggagagagggagagagtgaGAGTTGCAGATATAATTAAGAGACTTAGGGCAACGTGTGGCGGTGAAGAAGTGAGTAGTGAGCAAGAACAATGTAGTAGTGCGAATGCGATGGGATGTGGATCTCCACGAATAGTAGAACAAACGGAAAACAGAGTATTTGCAGTGAATTCGCCTCGATTCAGAGGACGTCAAGCTTTTACGAACTTGCTGATGCAGATGGAGCGTGATCGCCATGGAGACCTTAACAATTTGGCCGACCGAGGAGTTGTTTCCAAGTTTCCACACAAGGGTCGAATTCAGTCATTACTTCGACTCAAACTAATGCAACGTGGTGTAGCAGCTAATGATCAATGCCGTTCCCCATCACAAGTCATACGCCAACCACAGGGATCTGTAATTACGCGCTTAAGGGAAAGATTTAGCACAGGGGTTGAAAATGGAACAGCAGTTCAGGCAGAAGTAGCAGTTGACTCAAGAAGTCCTAGTAGAGACACACTAAACAATAATGTCACACAAATGGATAATAATACTCCTGCTACCCTTACTAGGCTTATTCAAAGTTGTCACTGTACAACACCTACACAAAACCCAGTGTCTCATAACAAAGAAGAAGATCATCCAACTTCAGAATATACCACAACAACAAGCAGTGAGGCTCAAAATGTTGAAGTGCAAAACAATTATAATGTGGACACAACTagtccatcttcttcttcttccatggcTGATGATTCAAAGGAAAATATTGAGATAGGAGAGATCAAGGTAGAGGGAAGTGATCATGAGAAGCATGTTATTGCGGAAGCTAGTTATATTGATGAGGAGGAAGAGGTAAGTGAGGAAGAGTTTGGTGAAAACAATTTTGAGGAAATACAAGAGGTAGAAACCAATGAGCAATGTTATAATGATGAAGCTAGTTTTGATTGGATTAGTCAGATTTCTAAACCAAGAAGCTATTGGGAAAGTCTCAGGGAAGCTTGGTATAGGGAGGTGCTTGAGACTGAATCAAAAAATGAGGACATATGCCAACTCCTTCAAAGAAAACCAGTGTCAACTTTCCTTTCCAGTAATTTCCGAGAAAGAATGGACAGATTGATGGAGTCTCACATTGGAACACAGACAAATCTATTCAGCAATAATGTTGAAGATGATGAACTAGACCAACAAGGGAGAATGGACCAGTTGATAGCGTTTTTACAGGAACACATGCATTCTtcaaaaagggaaagggaggaaAAGGAGGacatcaaagaagaagaagaagaagaagaagaaggagagcaaGAGGAACATGAGGAGGAGATTTTGATAAGTAGTTCATATAATGAAGAGAGTGATTCCATTAACCAAAGCTCATCCCCAGCACGCACTCTTTCATCTTCTCTTTCCACAACATGTCATTACAGAGATAATGAAGTTGGTGATGATTCTGATGTATCAGCTTCCACATCCTTACCACAACCTTCTCAAACTCACTCTTTCTATCAGCAGAGTCCAGAATACTCTTCATCCACGAATCATTCAATTGAAATGGATCTCGTATATGAATTGAGAGGGCATATGAAGCAACTCTATCAAGAGATGTCTGAGTTAAGGAAATCAATAAAGAGCTGCATGGATATGCAAATGACATTACAAAAATCGATGATTCGAGAAAGTCACACAGCTAAAGGAGGAAGGAAGTCTCATGACAGAGCTTTGAAGAAAGGAAACTGTTGTATTTGCTATAAGATGAAAGCTGATTCACTCTTTTACAGATGTGGGCATATGTGTACGTGTCTTAAATGCGCCAATGAGTTGCAATGGAAGAATGGGTTATGTCCAATCTGCCAGGCTACAATTATAGATGTTGTTCGAGTATATGTGGATGCATAG 2292 0.3866 MASSQVEFAASSSPFGYHHRNRCSNFNHFVRDNQINSKKNLRKLRFTPKREQQDDSSNWKILEDSNYKKSNSTPHSPLSSDDSAKSSNLGASSLVQIWEKRLTRSNYSESSDDNQEYSESNKTGSSGESQSSSPQGQVGGERERVRVADIIKRLRATCGGEEVSSEQEQCSSANAMGCGSPRIVEQTENRVFAVNSPRFRGRQAFTNLLMQMERDRHGDLNNLADRGVVSKFPHKGRIQSLLRLKLMQRGVAANDQCRSPSQVIRQPQGSVITRLRERFSTGVENGTAVQAEVAVDSRSPSRDTLNNNVTQMDNNTPATLTRLIQSCHCTTPTQNPVSHNKEEDHPTSEYTTTTSSEAQNVEVQNNYNVDTTSPSSSSSMADDSKENIEIGEIKVEGSDHEKHVIAEASYIDEEEEVSEEEFGENNFEEIQEVETNEQCYNDEASFDWISQISKPRSYWESLREAWYREVLETESKNEDICQLLQRKPVSTFLSSNFRERMDRLMESHIGTQTNLFSNNVEDDELDQQGRMDQLIAFLQEHMHSSKREREEKEDIKEEEEEEEEGEQEEHEEEILISSSYNEESDSINQSSSPARTLSSSLSTTCHYRDNEVGDDSDVSASTSLPQPSQTHSFYQQSPEYSSSTNHSIEMDLVYELRGHMKQLYQEMSELRKSIKSCMDMQMTLQKSMIRESHTAKGGRKSHDRALKKGNCCICYKMKADSLFYRCGHMCTCLKCANELQWKNGLCPICQATIIDVVRVYVDA 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0028 763 CDD mRING-HC-C3HC5_NEU1 710 749 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 105 144 - -
Sto2g0028 763 Pfam Zinc finger, C3HC4 type (RING finger) 708 755 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 579 607 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 44 87 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 295 314 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 540 644 - -
Sto2g0028 763 ProSiteProfiles Zinc finger RING-type profile. 711 750 IPR001841 -
Sto2g0028 763 MobiDBLite consensus disorder prediction 616 644 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 554 571 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 46 62 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 63 87 - -
Sto2g0028 763 SUPERFAMILY RING/U-box 710 755 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 331 362 - -
Sto2g0028 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 762 IPR013083 -
Sto2g0028 763 PANTHER BNAC05G24000D PROTEIN 1 762 - -
Sto2g0028 763 Coils Coil 538 575 - -
Sto2g0028 763 MobiDBLite consensus disorder prediction 105 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0028 Sto-Chr2 284438 288717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0028 710 760 C3H Transcription Factor Family AT3G25030 35.294 4.29e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0028 - - gmx:100796627 503.056