Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2520 ATGCCTAATAATGAAATGAATCATGCCttatctttcctcctttttcgGCTAGTTGTGATGAGTACATATGAAAGAAGAATGATTGAAAAATGGCTGAAAGCAGGGAACCGGACTTGCCCTCGGACGCAGCAAGTGCTGTCACACACTGTCCTCACTCCCAACCATCTAATAAGGGAAATAATTGGGCAATGGTGTGAAAATCATGGGATTCAATTGACCAACTCCAACCATGTGAATGAGCAAGGCATAGCAGAAGGAGAGCATCACCATTTTGTGTCTTTGCTTGAGAAAACGTCTTCTTCAACACTTTCTGAACAGAAAGCTGCTGCAAAGGAGCTTCGCTTGCTGACCAAAAAGATGCCTTCCTTCCGAGTACTGTTCGGAGAGACCTCACACGCCATCCCCAAATTGCTTAAACCCATATCTGGGAGTGGTAATACAAATAATCTTCACCTTGACCTACAAGAAGATGTGATCACAACACTTTTGAATATCTCAATCCATGATAACAACAAGAAGCTTGTAGCAGAAACTCCAATGGTAATCCCTCTTCTTATGAAAGCACTGAGAACCGGAACAATAGAGACACGAAGCAATGCAGCAGCTGCCCTTTTCACTCTGTCAGCTCTAGACTGCAATAAGCAACTTATAGGGAAAGCTGCAGCCTTGAAGCCACTAATAGACCTTTTAGAAGAAGGGCATCCCTTGGCCATGAAGGATGTTGCATCAGCAATTTTTAGCTTATGTGTGATTCATGAGAACAAGGTGAGGGCAGTGAAGGATGGGGCAGTGTGGGTGATTGTGAGGAAGATCATGGACGGGCTTCATGTAGATGAATTACTAGCGATCCTTGCGCTGCTGTCGAGTCACCAGAAGGCCATTCAGGATATGGGAGAGATTGGAGGTGTTACTTGCTTGCTAAGCATAATCAGGGAAAGCAAGTGTGATCGAAACAAAGAAAATTGCATAGCAATCCTTCAAACTATCTGTCTCTATGATAGAACCAAGTTGAAGGACATGAGGGAAGAGGAGAACAAGCACAGAACAATCTCTGAACTTGCACTAAATGGAACTTCAAGGGCTAAGAGGAAGGCTACTGCAATTCTTGAGAGACTAAATAGGGTTGTTAATATCACACACACTGCATAA 1149 0.4282 MPNNEMNHALSFLLFRLVVMSTYERRMIEKWLKAGNRTCPRTQQVLSHTVLTPNHLIREIIGQWCENHGIQLTNSNHVNEQGIAEGEHHHFVSLLEKTSSSTLSEQKAAAKELRLLTKKMPSFRVLFGETSHAIPKLLKPISGSGNTNNLHLDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMKALRTGTIETRSNAAAALFTLSALDCNKQLIGKAAALKPLIDLLEEGHPLAMKDVASAIFSLCVIHENKVRAVKDGAVWVIVRKIMDGLHVDELLAILALLSSHQKAIQDMGEIGGVTCLLSIIRESKCDRNKENCIAILQTICLYDRTKLKDMREEENKHRTISELALNGTSRAKRKATAILERLNRVVNITHTA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2520 382 PANTHER U BOX DOMAIN-CONTAINING 21 380 - -
Sto1g2520 382 ProSiteProfiles U-box domain profile. 22 71 IPR003613 GO:0004842|GO:0016567
Sto1g2520 382 Pfam U-box domain 22 68 IPR003613 GO:0004842|GO:0016567
Sto1g2520 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 71 IPR013083 -
Sto1g2520 382 SUPERFAMILY ARM repeat 92 372 IPR016024 -
Sto1g2520 382 SUPERFAMILY RING/U-box 22 72 - -
Sto1g2520 382 Gene3D - 72 376 IPR011989 -
Sto1g2520 382 SMART Ubox_2 5 64 IPR003613 GO:0004842|GO:0016567
Sto1g2520 382 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 21 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2520 Sto-Chr1 32657791 32659243 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2520 60 382 U-box Gene Family AT3G07360 59.146 9.00e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2520 - - lang:109360713 529.25