Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2515 ATGGCGAAGCGGGGAGTAGTGTTGGAATGCGATCCTAGGGTTGTGGTGGTGAAAAAGGAATTAGAGAGGATGGTGAAATGTATcgttgaggaagaagaagattgtTGCGAAAGCCTTATTGATGCAGCCAAGGAGGCTCTGAGTTTGCTCAAGGACCTCAACCTCAGAAACAAATCATCCTCCACTACCTCACTTCCTTCTTCGCCTCAACAATTCAACTGCCCTCTCTCTAACCAATTGATGACGGATCCTGTCATTCTCGCCTCCGGCCAGACATATGAAAGAAGAATGATTGAAAAATGGCTGAAAGCAGGGAACCGGACTTGCCCTCGGACGCAGCAAGTGCTGTCACACACTGTCCTCACTCCCAACCATCTAATAAGGGAAATAATTGGGCAATGGTGTGAAAATCATGGGATTCAATTGACCAACTCCAACCATGTGAATGAGCAAGGCATAGCAGAAGGAGAGCATCACCATTTTGTGTCTTTGCTTGAGAAAACGTCTTCTTCAACACTTTCTGAACAGAAAGCTGCTGCAAAGGAGCTTCGCTTGCTGACCAAAAAGATGCCTTCCTTCCGAGTACTGTTCGGAGAGACCTCACACGCCATCCCCAAATTGCTTAAACCCATATCTGGGAGTGGTAATACAAATAATCTTCACCTTGACCTACAAGAAGATGTGATCACAACACTTTTGAATATCTCAATCCATGATAACAACAAGAAGCTTGTAGCAGAAACTCCAATGGTAATCCCTCTTCTTATGAAAGCACTGAGAACCGGAACAATAGAGACACGAAGCAATGCAGCAGCTGCCCTTTTCACTCTGTCAGCTCTAGACTGCAATAAGCAACTTATAGGGAAAGCTGCAGCCTTGAAGCCACTAATAGACCTTTTAGAAGAAGGGCATCCCTTGGCCATGAAGGATGTTGCATCAGCAATTTTTAGCTTATGTGTGATTCATGAGAACAAGGTGAGGGCAGTGAAGGATGGGGCAGTGTGGGTGATTGTGAGGAAGATCATGGACGGGCTTCATGTAGATGAATTACTAGCGATCCTTGCGCTGCTGTCGAGTCACCAGAAGGCCATTCAGGATATGGGAGAGATTGGAGGTGTTACTTGCTTGCTAAGCATAATCAGGGAAAGCAAGTGTGATCGAAACAAAGAAAATTGCATAGCAATCCTTCAAACTATCTGTCTCTATGATAGAACCAAGTTGAAGGACATGAGGGAAGAGGAGAACAAGCACAGAACAATCTCTGAACTTGCACTAAATGGAACTTCAAGGGCTAAGAGGAAGGCTACTGCAATTCTTGAGAGACTAAATAGGGTTGTTAATATCACACACACTGCATAA 1359 0.4408 MAKRGVVLECDPRVVVVKKELERMVKCIVEEEEDCCESLIDAAKEALSLLKDLNLRNKSSSTTSLPSSPQQFNCPLSNQLMTDPVILASGQTYERRMIEKWLKAGNRTCPRTQQVLSHTVLTPNHLIREIIGQWCENHGIQLTNSNHVNEQGIAEGEHHHFVSLLEKTSSSTLSEQKAAAKELRLLTKKMPSFRVLFGETSHAIPKLLKPISGSGNTNNLHLDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMKALRTGTIETRSNAAAALFTLSALDCNKQLIGKAAALKPLIDLLEEGHPLAMKDVASAIFSLCVIHENKVRAVKDGAVWVIVRKIMDGLHVDELLAILALLSSHQKAIQDMGEIGGVTCLLSIIRESKCDRNKENCIAILQTICLYDRTKLKDMREEENKHRTISELALNGTSRAKRKATAILERLNRVVNITHTA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2515 452 SUPERFAMILY RING/U-box 62 142 - -
Sto1g2515 452 Gene3D - 142 446 IPR011989 -
Sto1g2515 452 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Sto1g2515 452 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 14 450 - -
Sto1g2515 452 Pfam U-box domain 69 138 IPR003613 GO:0004842|GO:0016567
Sto1g2515 452 PANTHER U BOX DOMAIN-CONTAINING 14 450 - -
Sto1g2515 452 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Sto1g2515 452 SUPERFAMILY ARM repeat 162 442 IPR016024 -
Sto1g2515 452 CDD RING-Ubox_PUB 72 114 IPR045210 -
Sto1g2515 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 141 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2515 Sto-Chr1 32623237 32625755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2515 130 452 U-box Gene Family AT3G07360 59.146 1.62e-130 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2515 - - gmx:100809408 607.831