Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2510 ATGGAAAACGATTTCTTCCTCAATGCCCCTTCCTCCTGGCAATCACTCTCCTCCGCCATGGATATTCTCAATTCCTCTTCAGACCACACTCAAGATTGCTTTTATAACAACAATTCATGGGATAACTCAACGGATCATCACCCTCTCCAATTCGATTCTGCTCTGAGCTCCATGGTTTCTTCCCCGTCGCCTTCCAATTCCAATATTGTCCCCAACAACGACAGTTTCCTCATCAGGGAATTGATAGGCAAATTGGGAAACATTGGTGCTTCATCTTCTTACATCAATGGCAGTAACAGCACCAATACTTCCTCTTACACCACTCCCTTGAGCTCTCCTCCAAAGATGCCCAAATCCATGCCTGTCAATTCCACTGTGGCCGAATTCTCTTCTGATCCTGGTTTTGCAGAGAGGGCTGCCAAGTTTTCTTGCTTTGGAAGCAGGAGCTTCAATGGCAGAACCAACCAACTGGGTTTGAACAACAATGCTCAGATTTCTCTAAGATCTACTCCTCCATTCATGGAAAATGGCAAGCTCCCTCGAGTCTCTAGTAGCCCATCTCTGAAAGCACTTGGGGGATCTCAATCTCCATCTCCATTAATGGACAATTCTCAAGAGGAATCAACGCTCTCTGAGCAAACCCCATCCAATTCCAGGAAGAGAAAGGCTTCTTCCAAGACAAAACCCAAGGctaataatattgaagaatCAAATGCAAAGCGAAGCAAGGCAAACGAGAGcgaaggaaatgaaaatgggaCAGTGAAGACAGAGGAAGAGTCAAAAGGAGGAGATGAGAAACAGAACAAGAGTAACTCATCCAAACCTCCTGAACCTCCAAAGGACTACATTCATGTCAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTCGCTGAAAGAGTTCGAAGAGAAAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTGACTGGGAAAGCACTTATGCttgatgaaattataaattatgtgcAGTCATTGCAGCGTCAAGTTGAGttTTTATCTATGAAACTGGCTTCTGTAAACACCAGACTGGATTTCAATATTGACACCCTAATCTCAAAAGATATATTTCAATCAAATAACACAATGGCACGCCCAATATTCCCCTTAGATTCCTCAGCACAAGCCTTTTATGGACACCAGCAAAACCCAGGAATCCACAATAGCATTTTGAATGGAACTATGACCCACACCACAGTGGACCCATTAGAGACTGCTTCTCTCTGCCACAACATTGGCGTGCAAATGCAATTACCTTCCCTTAATGCCTTCACCACTGAAGCTGCTCCTCAGTTTCCAGTAACATTCTGTGAGGATGACCTCAACACAATTGTTCAAATGGGATTTGGCCAAACTGCAAGTGGGAAATCACCCTCTCAGTCCCACAACTTGAACGGATCAAATCAAATGTCCCATTCCCATATGAAAGTTGAGCTCTAA 1488 0.4294 MENDFFLNAPSSWQSLSSAMDILNSSSDHTQDCFYNNNSWDNSTDHHPLQFDSALSSMVSSPSPSNSNIVPNNDSFLIRELIGKLGNIGASSSYINGSNSTNTSSYTTPLSSPPKMPKSMPVNSTVAEFSSDPGFAERAAKFSCFGSRSFNGRTNQLGLNNNAQISLRSTPPFMENGKLPRVSSSPSLKALGGSQSPSPLMDNSQEESTLSEQTPSNSRKRKASSKTKPKANNIEESNAKRSKANESEGNENGTVKTEEESKGGDEKQNKSNSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFNIDTLISKDIFQSNNTMARPIFPLDSSAQAFYGHQQNPGIHNSILNGTMTHTTVDPLETASLCHNIGVQMQLPSLNAFTTEAAPQFPVTFCEDDLNTIVQMGFGQTASGKSPSQSHNLNGSNQMSHSHMKVEL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2510 495 MobiDBLite consensus disorder prediction 167 283 - -
Sto1g2510 495 Gene3D - 289 364 IPR036638 GO:0046983
Sto1g2510 495 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 486 IPR024097 GO:0006355
Sto1g2510 495 Coils Coil 339 359 - -
Sto1g2510 495 PANTHER BHLH TRANSCRIPTION FACTOR 15 486 - -
Sto1g2510 495 Pfam Helix-loop-helix DNA-binding domain 296 343 IPR011598 GO:0046983
Sto1g2510 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 361 IPR036638 GO:0046983
Sto1g2510 495 MobiDBLite consensus disorder prediction 98 121 - -
Sto1g2510 495 MobiDBLite consensus disorder prediction 466 495 - -
Sto1g2510 495 SMART finulus 298 348 IPR011598 GO:0046983
Sto1g2510 495 MobiDBLite consensus disorder prediction 233 272 - -
Sto1g2510 495 MobiDBLite consensus disorder prediction 180 220 - -
Sto1g2510 495 CDD bHLH_AtBPE_like 282 367 - -
Sto1g2510 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 342 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2510 Sto-Chr1 32544824 32546973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2510 1 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 49.679 8.08e-113 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto1g2510 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2510 - - gmx:100812081 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0829 6 8208389 8210869 Sto1g2510 1 32544824 32546973 CCT