Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto1g2489 | ATGAGTGCTCAAGCTGTCAGGGGGCCTGCTGTCAGAAGTCAGCAGAGGAGGAAGACAGTTTTGGACTTGGACCTTAACTGTTCCCCACCTAGTGAGAATCGGGAAGAGGGGGGACCTTCAACTCTGTCTGGGCCTCCAGAAGTTCAAGCTGGTCAGCAACTACTGGCTGTACAGCCTACAATGATTGATGTGGAGGCCATTGATGACGATGTTGTTGAATCCTCTCCCAGGGATTTTGCGGAGGCTAAAAACAATTTGAGAAGAAATCGTAGGAGGAGGACTATAGTTGATGTGGATTTAGAAGATTGTGCTAGAGTAACCAATAATAATCGATATAAACGGAGAAGAGGATCCCCGAATCAAACAATTATTAACTGTGATCTTTATATAAACCTGGAAGGCTGTAGCAGCTCTATGAGGGAAAATGTAGGAAACCTGCCTGAACCTCCAAAGGACCCTGTCTTCAACTGTCCAATATGTATGGGACCATTAGTAGAAGAAATGTCAACAAGGTGCGGTCATATTTTTTGCAAGAATTGCATTAAAGCTGCAATAAAGGTGCAGAATAAATGCCCCACCTGCCGAAAAAAGGTTACTATGAAAGAGCTTATAAGGGTGTTTCTTCCATCAAGTAGTTGA | 639 | 0.4382 | MSAQAVRGPAVRSQQRRKTVLDLDLNCSPPSENREEGGPSTLSGPPEVQAGQQLLAVQPTMIDVEAIDDDVVESSPRDFAEAKNNLRRNRRRRTIVDVDLEDCARVTNNNRYKRRRGSPNQTIINCDLYINLEGCSSSMRENVGNLPEPPKDPVFNCPICMGPLVEEMSTRCGHIFCKNCIKAAIKVQNKCPTCRKKVTMKELIRVFLPSSS | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto1g2489 | 212 | SMART | ring_2 | 157 | 194 | IPR001841 | - | |
| Sto1g2489 | 212 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Sto1g2489 | 212 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 195 | IPR001841 | - | |
| Sto1g2489 | 212 | SUPERFAMILY | RING/U-box | 156 | 201 | - | - | |
| Sto1g2489 | 212 | ProSitePatterns | Zinc finger RING-type signature. | 172 | 181 | IPR017907 | - | |
| Sto1g2489 | 212 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 210 | IPR013083 | - | |
| Sto1g2489 | 212 | Pfam | Zinc finger, C3HC4 type (RING finger) | 156 | 194 | - | - | |
| Sto1g2489 | 212 | PANTHER | ELFLESS, ISOFORM B | 9 | 211 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto1g2489 | Sto-Chr1 | 32386249 | 32387951 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto1g2489 | 1 | 211 | C3H Transcription Factor Family | AT5G48655 | 48.113 | 4.56e-49 | 157 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto1g2489 | K22651 | - | gmx:100306616 | 263.077 |