Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2482 ATGGCTCTTCCAAAAGTGAACAAAATGTTGCTTGAGGAACTCGAATCCATGGGATTTCCCCAGGCACGGGCAATACGAGCACTTCATTATTCTGGCAATACTAGCATAGAGGATGCTATAAATTGGATAGTTGATCATGAGAATGATGCCGATATTGATGAAATTCCATTAGTAGATGTAAATATTGAGATTGGTTCTTCGCAATCATTCCCTATCACAGAAAAAATGATAATCAAAGCACACAAGTTAAGGGAAAACCTGCACAAGAggaaagaggaggaagaaaaaaaattggagagggaaagggagaaGGAGAGGATCAAAGCAGGTAAGAAACTCAATGAGATGAAGCGAATCGCCGAAGAAAACGAAAGGCAACGGAATATAGCCTTGCGAAaagcagagaaagaagaagagaaaagagcAAGGGAACAAGTTAGACAGAAACTAGAACAGGATAAGTTAAATAGAAGATCTAATCTTGGATTGCCACTAGAAGGCCATGCATCTGTGAAATCTTCAGCTACTGTTGTACCAAAAGAAAAGCGGAAAATGCAGGATTCGAAGCCGGTTTACACAGTTAAAAAAGTTGATCTTTTGAGAGAATGTTTGAGGTCTCTCAAGCGTAACCACCAGGGTGAGCAAGACAGAGTCAGAAGAGCCTTTGAAACACTCTTAATTTATGTTGGAAATGTTTCCAAGAATCCGGACGAGGAAAAATACAGGAAGATCCGTCTGAGCAACCCATTATTCCAGGATAGAGTTGGGAGTTTAAAAGGAGGTGTGGAGTTTCTTGAACTTTGTGGGTTTGAGAGAATGGGTGACTTCTTATACCTTCCTCGCGAAAAAGTCGACATAACAGTAATAAATTCAGCTGGGTTTGTTTTGAAGTCTGCAATGACAAATCCCTTCTTTGGATTGTTAAGTACTTAG 933 0.3698 MALPKVNKMLLEELESMGFPQARAIRALHYSGNTSIEDAINWIVDHENDADIDEIPLVDVNIEIGSSQSFPITEKMIIKAHKLRENLHKRKEEEEKKLEREREKERIKAGKKLNEMKRIAEENERQRNIALRKAEKEEEKRAREQVRQKLEQDKLNRRSNLGLPLEGHASVKSSATVVPKEKRKMQDSKPVYTVKKVDLLRECLRSLKRNHQGEQDRVRRAFETLLIYVGNVSKNPDEEKYRKIRLSNPLFQDRVGSLKGGVEFLELCGFERMGDFLYLPREKVDITVINSAGFVLKSAMTNPFFGLLST 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2482 310 CDD PUB_UBA_plant 204 308 - -
Sto1g2482 310 CDD UBA_PUB_plant 6 53 - -
Sto1g2482 310 Gene3D - 8 53 - -
Sto1g2482 310 Gene3D - 202 297 - -
Sto1g2482 310 MobiDBLite consensus disorder prediction 132 156 - -
Sto1g2482 310 MobiDBLite consensus disorder prediction 132 188 - -
Sto1g2482 310 SMART uba_6 7 45 IPR015940 -
Sto1g2482 310 Coils Coil 77 108 - -
Sto1g2482 310 SUPERFAMILY PUG domain-like 198 304 IPR036339 -
Sto1g2482 310 Coils Coil 113 156 - -
Sto1g2482 310 PANTHER F13M7.16 PROTEIN 1 310 - -
Sto1g2482 310 Pfam UBA/TS-N domain 11 43 IPR015940 -
Sto1g2482 310 PANTHER PUB DOMAIN-CONTAINING PROTEIN-RELATED 1 310 - -
Sto1g2482 310 Pfam PUB domain 216 285 IPR018997 -
Sto1g2482 310 SMART PGNneu 220 281 - -
Sto1g2482 310 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Sto1g2482 310 SUPERFAMILY UBA-like 6 56 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2482 Sto-Chr1 32352433 32354743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2482 1 308 C2H2 Transcription Factor Family AT1G04850 57.742 8.00e-100 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2482 K24348 - gmx:100781260 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2482 1 32352433 32354743 Sto1g2482 1 32352433 32354743 ECH