Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2471 ATGCCAGCAGCCGATAGCCACCGAGAGTCGCTTGCCGGATTAAGCCTCGACGACGTGTTAGCGAACAGAGCAGCGTCGGGCAATCAGCTCGCCACACGACGAACACTCCTTGACATCATTCGTGAAGACGAATCCATCAACAAGAAGGATCGCAAATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTTAAGCGTGCCGGATCTGCTTGGACCTCATCCATCCTTATCCCTACTTCCGATATCTCTATCCCTCTCCAGAATAACAGAACCCTATTCTCACAACTTCCACGCCGTAGCTCCCTTCGAGTCATCACATTCCCCTCGTCCGACGTGGCGACTCATTACATGGCTGATTCACCACGCAAGGACGAAGTCGTCAAGGGATCTGACGACTCCAACTCCGCTGCTCCCACCATCACGCGCCAGGGCTCCACGCGCCTCATCGGCGATGCCTCCCTTGATGACAAACTTAAGCCACAAATGTCCCGCCCTAACTCTGCACGACTGGCGGCCGCGGTGCGTGCGGATTCCATCCGGCGAGAGCGCGTGGTGACTTTTCGAGACAGCAATGATAGCGACGACGAGGACGACGATGTGCGCTCATTACGTTCGAAGGCGGATCAGAGACAGATGTCTGCCAGAGAAGCTGTGGCTGCCCAGGAGGCGGCAGAGGCGGCGGCCGCAGCCGCCGCGGAGGATGAGGAGGAGGACGAAGAGGATGATGACGAAGAGGGGAATGGAGGCGGAGCGGTGACGATGTCGCTGATGGACTTGCTGGAGGAGACGGATAGGCAAATGGGGCTTGAGGGTTCGAGGTACAGAATGGAAGACGATGACGATGagattgatgatgatgaagactGGGATGAGGAAGACGAAGGAGCTTTGGAGTATGATTGCTGCGTGTGCATGGTGAAGCATAGAGGCTCTGCGTTCGTACCGTGTGGCCATGCGTTTTGCAGAATGTGCTCCAGGGAGCTCACCGTGACTAAGGGGAATTGTCCTCTCtgcaacaattttattttggaaattCTTGAGATTTTCTGA 1047 0.5406 MPAADSHRESLAGLSLDDVLANRAASGNQLATRRTLLDIIREDESINKKDRKSWKAFKDKLRLKRAGSAWTSSILIPTSDISIPLQNNRTLFSQLPRRSSLRVITFPSSDVATHYMADSPRKDEVVKGSDDSNSAAPTITRQGSTRLIGDASLDDKLKPQMSRPNSARLAAAVRADSIRRERVVTFRDSNDSDDEDDDVRSLRSKADQRQMSAREAVAAQEAAEAAAAAAAEDEEEDEEDDDEEGNGGGAVTMSLMDLLEETDRQMGLEGSRYRMEDDDDEIDDDEDWDEEDEGALEYDCCVCMVKHRGSAFVPCGHAFCRMCSRELTVTKGNCPLCNNFILEILEIF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2471 348 PANTHER OS01G0917900 PROTEIN 5 348 - -
Sto1g2471 348 MobiDBLite consensus disorder prediction 228 246 - -
Sto1g2471 348 MobiDBLite consensus disorder prediction 185 250 - -
Sto1g2471 348 SMART ring_2 300 337 IPR001841 -
Sto1g2471 348 CDD RING-HC 300 337 - -
Sto1g2471 348 MobiDBLite consensus disorder prediction 131 147 - -
Sto1g2471 348 ProSiteProfiles Zinc finger RING-type profile. 300 338 IPR001841 -
Sto1g2471 348 PANTHER OS01G0917900 PROTEIN 5 348 - -
Sto1g2471 348 MobiDBLite consensus disorder prediction 117 172 - -
Sto1g2471 348 MobiDBLite consensus disorder prediction 196 210 - -
Sto1g2471 348 Pfam Zinc finger, C3HC4 type (RING finger) 298 341 - -
Sto1g2471 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Sto1g2471 348 SUPERFAMILY RING/U-box 299 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2471 Sto-Chr1 32305166 32306212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2471 1 348 C3H Transcription Factor Family AT3G07120 36.000 2.40e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2471 - - gmx:100795449 290.041