Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2424 ATGGTGGTGATACAACAGGAAGAGACTGAGGAGCAAGTAGTGAATCCCTTCGATGCCAATAAGGAAGCTTCCGATGGCTTTGAAACCGCCAGCGATGCCGAACTTGGCAGCGATGGAGAGGATGATGGCGCCGGAGCTTGCAGTCGCGGTGGTGATGCGCAAAATGAACCAGGTCGACAACATCAAAATCCGGAGCAGGTGCAGGGGATTCCTCTGAGTAGTGATTCTTCAGAAGATGCCTTGAACAGCGAGGAGCTGAAACAGAAAGCATTGGCTGAAGCAAATGATGCAAAACTAGAAGGGAATAAGCTGTTTGGAGATGGGAAATATGAGGAGGCATTATCAAAGTATGAACTGGCTTTACAAGTTGCTCCAGACATGCCTTCATCTGTAGAAATACGCTCAATATGTCATTCAAACCGTGCTGTATGCTTTATGAAATTGGGGCAATATGAAAACACAATCAAAGAATGCACTAAAGCATTAGAACTAAATCCTGTATATGTGAAAGCTTTGGCGAGAAGAGGCGAAGCTCATGAAAAGCTTGAACATTTTGAAGAGGCCATAGCTGATATGAAAAAGATCTTAGAAATTGATGCTTCAAATGATCAAGCTAGGAAAACCATTCGGCGATTGGAACCCCTGGCAGCAGAAAAACGAGAAAAAATGAAGGAAGAAATGATTACTAAACTGAAAGAAATGGGCAATTCTGTGTTGGGCCGCTTTGGGATGAGTGTTGACAACTTCAAAGCTGTTCAAGACCCAAAAACTGGTTCCTATTCTATCTCATTCCAACGCTGA 801 0.437 MVVIQQEETEEQVVNPFDANKEASDGFETASDAELGSDGEDDGAGACSRGGDAQNEPGRQHQNPEQVQGIPLSSDSSEDALNSEELKQKALAEANDAKLEGNKLFGDGKYEEALSKYELALQVAPDMPSSVEIRSICHSNRAVCFMKLGQYENTIKECTKALELNPVYVKALARRGEAHEKLEHFEEAIADMKKILEIDASNDQARKTIRRLEPLAAEKREKMKEEMITKLKEMGNSVLGRFGMSVDNFKAVQDPKTGSYSISFQR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2424 266 Pfam Tetratricopeptide repeat 137 166 IPR001440 GO:0005515
Sto1g2424 266 ProSiteProfiles TPR repeat profile. 94 127 IPR019734 GO:0005515
Sto1g2424 266 MobiDBLite consensus disorder prediction 1 83 - -
Sto1g2424 266 MobiDBLite consensus disorder prediction 55 79 - -
Sto1g2424 266 SUPERFAMILY TPR-like 93 212 IPR011990 GO:0005515
Sto1g2424 266 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 8 266 - -
Sto1g2424 266 SMART tpr_5 169 202 IPR019734 GO:0005515
Sto1g2424 266 SMART tpr_5 135 168 IPR019734 GO:0005515
Sto1g2424 266 SMART tpr_5 94 127 IPR019734 GO:0005515
Sto1g2424 266 ProSiteProfiles TPR repeat profile. 169 202 IPR019734 GO:0005515
Sto1g2424 266 Gene3D Tetratricopeptide repeat domain 62 233 IPR011990 GO:0005515
Sto1g2424 266 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 8 266 - -
Sto1g2424 266 Pfam Tetratricopeptide repeat 170 202 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2424 Sto-Chr1 31926364 31928877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2424 81 225 Calmodulin-binding Proteins AT3G25230 37.255 1.51e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2424 K24926 - gmx:100808386 368.237