Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2391 ATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGACACTTTATTACTTGCATATGTGAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCTAAACGCATGAACACACCCCTTGAAAGGGAtgccaagtcatgcttagaaaGGTGGAAGAACTACCTCAAGCCCGGTGTCAAGAAAGGATCTCTCACTGAAGAAGAGCAGCGTCTTGTGATCCACCTCCAAGCGAAACACGGCAACAAATGGAAGAAAATCGCTTCAGAAGTCCCCGGCCGAACGGCCAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAAAATAAGcagaaaattgataataataataaaacagtTGATCCAATTCATGACACCAAATATGATCATCTCCTACAAACTTTTGCTGAGAAACTAGTGAAGGACCACCCTTCCCCATCCTATCTTATGCATACTGACAATGCACCACCACCATCCCCTGCATCATCTTTGCTTCCTCCTTGGCTTCCCAATTCTAAATCTCCTTCTGTGACACTAAGTCTTTCTCCTTCAACTCTGGCAAAACCTCCATTTCCATGGTTGAAAAATGAGGGACCTTGTGGATCAATAACTTGTTTAGGTGATTTGGTGGAGTGTCTTAAAGAGTTGGAAGAAGGGCATCATGCTTGGGAAACACATAGGAAGGAGGCAGCATGGAGATTAAGTAGGCTTGAGTTGCAGATAGAGTCGGAGAAGGCCTGCCGGAGGCGGGAGAAGATCGAAGAAACCGAAGCAAAGATTGAAGCTCTTAGGGAAGAGCAAGAGGCTGCTTTGGATAGAATTGAAGCAGAATACAGGAAACAGTTAACAGATTTGAGAATAGATGCAGAAACCAAGGAGAAGAATATTGCTGAGCAATGGGCTACAAAACACCTTAAGCTTATGAACTTTCTGAGATAG 945 0.4286 MKERQRWRAEEDTLLLAYVKQYGPREWNLVSKRMNTPLERDAKSCLERWKNYLKPGVKKGSLTEEEQRLVIHLQAKHGNKWKKIASEVPGRTAKRLGKWWEVFKEKQQRENKQKIDNNNKTVDPIHDTKYDHLLQTFAEKLVKDHPSPSYLMHTDNAPPPSPASSLLPPWLPNSKSPSVTLSLSPSTLAKPPFPWLKNEGPCGSITCLGDLVECLKELEEGHHAWETHRKEAAWRLSRLELQIESEKACRRREKIEETEAKIEALREEQEAALDRIEAEYRKQLTDLRIDAETKEKNIAEQWATKHLKLMNFLR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2391 314 Pfam Myb-like DNA-binding domain 7 67 - -
Sto1g2391 314 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Sto1g2391 314 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 313 - -
Sto1g2391 314 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Sto1g2391 314 PANTHER TRANSCRIPTION FACTOR AS1 1 313 IPR031055 GO:0005634|GO:0006351|GO:0010338
Sto1g2391 314 CDD SANT 6 53 IPR001005 -
Sto1g2391 314 Gene3D - 4 58 - -
Sto1g2391 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Sto1g2391 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Sto1g2391 314 SMART sant 3 55 IPR001005 -
Sto1g2391 314 SMART sant 58 106 IPR001005 -
Sto1g2391 314 CDD SANT 63 104 IPR001005 -
Sto1g2391 314 Coils Coil 252 297 - -
Sto1g2391 314 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Sto1g2391 314 Gene3D - 62 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2391 Sto-Chr1 31726074 31727018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2391 1 313 MYB Transcription Factor Family AT2G37630 57.300 1.27e-133 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto1g2391 Myb_DNA-bind_6 7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2391 K09422 - zju:107430642 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2391 1 31726074 31727018 Sto6g0635 6 6701733 6702818 CCT
Sto1g2391 1 31726074 31727018 Sto1g2391 1 31726074 31727018 ECH