Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2389 ATGAATCTGCAGAATGTGGCAGAAACCATTCAATTGATTAAAAGACCCATCAGTGCGGCCATGTCTGAGCTTGATGTTTCTTTctccgagaagaagaagaagaagaagcaccaAAACAAAGATGAGAATGATGAGGCGACCCAGAAAGACACCGACTTCATGATCAAGCCACAGAGCTTCACTCCCTCCATCGATACCTCTCAATGGCCGATTCTCCTCAAGAACTACGACCGCCTCAATGTTCGAACCGGACACTACACTCCCATCCCCTCCGGTTACTCCCCCCTCAAGCGTCCTCTCGCAGACTACATCAAGTACGGCGTTCTCAATCTCGACAAGCCCGCGAACCCATCTTCGCACGAGGTCGTTGCTTGGATCAAACGGATCCTCCGAGTCGAGAAAACGGGTCATAGTGGTACCCTCGACCCGAAGGTCACAGGAAACCTCATTGTCTGCATCGATAGGGCGACTCGGCTCGTGAAATCGCAACAAGGTGCTGGGAAAGAGTACGTGTGTGTGGCTCGATTGCATTCTAAGGTTCCTGATGTTGCGAAGGTGGCTCGAGCGCTTGAAACGCTTACTGGAGCTGTGTTTCAGAGGCCACCATTGATTTCTGCGGTGAAGAGGCAGCTGAGGATTAGGACTATATATGAAAGTAAGCTTCTTGAGTATGACGCAGATAAGCATTTAGTCGTGTTTTGGATTTCCTGTGAGGCAGGTACTTATGTGAGGACTATGTGTGTACATTTGGGTTTGATTCTTGGTGTGGGAGGGCATATGCAAGAGCTTAGAAGGGTGCGTTCTGGAATTATGGGTGAGAAAGATAACATGGTGACTATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTATAGGGATGAGAGTTATTTGAGAAGGGTTATTATGCCACTTGAGATGCTTCTGACAAGTTATAAGAGATTGGTTGTGAAGGATTCATCTGTGAATTCGATTTGTTATGGGGCAAAGCTGATGATTCCTGGGTTATTGAGGTTCGAAAATGATATTGAGGTGGGTGAGGAAGTTGTGCTTATGACTACTAAAGGTGAAGCAATTGCTTTGGGAATTGCAGAGATGACTACTGCTGTCATGGCAACTTGTGATCATGGTGCCGTGGCCAAGATTAAAAGGGTTGTGATGGATCGCGATACATATCCCAGGAAATGGGGTCTTGGTCCAGTGGCAtcaaggaagaagaaaatgatttCACAGGGGCTGCTAGATAAGCATGGAAAGCCAAATGAGAAGACTCCTCAAGAGTGGCTGAGGAATATGGTGTTACCAACTGGTGGAGATGCTGTGATTGCTGGTCTTGCTGCTTCGTCTGAACCAGATGCAGTAAAGGAGACTGATGTGGAGAAGGAAAATACTAAGAGAAAATTAGAAGAAATCAATGGTAGCCCTGTTTCTGTTCCTAAGAAGAAGGTGAAAGTCGAAGAATTTGAAAAGGTTGAAGTAGAAACATTGAAAGTCAAGAAGGTGAATGATGAACTTGTGGAGGCTGAAGttgagaagaaagagaaaaagaaaaagaagaagaaggataaaGAGAATGATGTAGCGGCATCTTCTGATGAGGAGAAAtctagaaaagagaagaaggagaagaagaagaagcacaaggagaaggaagaagccaCTTCGCCAGATACCGAGAAGTCTGAGAAGAAGAAATCAAAGAAGAAGGACAAAGATGCTGAAGAGAAGGCTGTTGACTTGCCTGCAGAGGATGGTGATCGAAGTGAGAAGAAGAAACACAAGAAGAAAAAATCTAAAGATGCAGAGTAG 1812 0.42 MNLQNVAETIQLIKRPISAAMSELDVSFSEKKKKKKHQNKDENDEATQKDTDFMIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLADYIKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSKVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEMLLTSYKRLVVKDSSVNSICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVASRKKKMISQGLLDKHGKPNEKTPQEWLRNMVLPTGGDAVIAGLAASSEPDAVKETDVEKENTKRKLEEINGSPVSVPKKKVKVEEFEKVEVETLKVKKVNDELVEAEVEKKEKKKKKKKDKENDVAASSDEEKSRKEKKEKKKKHKEKEEATSPDTEKSEKKKSKKKDKDAEEKAVDLPAEDGDRSEKKKHKKKKSKDAE 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2389 603 MobiDBLite consensus disorder prediction 454 470 - -
Sto1g2389 603 Gene3D PUA domain 66 397 IPR036974 GO:0003723
Sto1g2389 603 MobiDBLite consensus disorder prediction 500 591 - -
Sto1g2389 603 Pfam PUA domain 314 386 IPR002478 GO:0003723
Sto1g2389 603 Coils Coil 29 49 - -
Sto1g2389 603 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 33 552 IPR004802 GO:0006396
Sto1g2389 603 Coils Coil 492 554 - -
Sto1g2389 603 Pfam TruB family pseudouridylate synthase (N terminal domain) 127 243 IPR002501 GO:0006396
Sto1g2389 603 SUPERFAMILY PUA domain-like 313 394 IPR015947 -
Sto1g2389 603 TIGRFAM CBF5: putative rRNA pseudouridine synthase 73 398 IPR004802 GO:0006396
Sto1g2389 603 SMART DKCLD_2 65 123 IPR012960 -
Sto1g2389 603 MobiDBLite consensus disorder prediction 29 51 - -
Sto1g2389 603 TIGRFAM unchar_dom_2: uncharacterized domain 2 308 385 IPR004521 GO:0003723
Sto1g2389 603 Gene3D Pseudouridine synthase 99 305 - -
Sto1g2389 603 MobiDBLite consensus disorder prediction 449 473 - -
Sto1g2389 603 Pfam DKCLD (NUC011) domain 66 123 IPR012960 -
Sto1g2389 603 SUPERFAMILY Pseudouridine synthase 66 311 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sto1g2389 603 MobiDBLite consensus disorder prediction 29 55 - -
Sto1g2389 603 Pfam tRNA pseudouridylate synthase B C-terminal domain 244 310 IPR032819 -
Sto1g2389 603 ProSiteProfiles PUA domain profile. 313 388 - -
Sto1g2389 603 SMART pua_5 314 388 IPR002478 GO:0003723
Sto1g2389 603 MobiDBLite consensus disorder prediction 500 603 - -
Sto1g2389 603 CDD PseudoU_synth_hDyskerin 105 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2389 Sto-Chr1 31705612 31713389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2389 21 485 NAC Transcription Factor Family AT3G57150 80.810 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2389 K11131 - egr:104445303 807.749