Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2363 ATGGATGAGCAAGGTCAATTTTGGATGTGGACAAAGAGGAAGTACTGTATGAGCTCTTCATCAACAAAGCTGTCTAATTGTAATAATAATTCGTATGATGAGTCTTCATGGGAGGAGCAAGCTTTCGCAGAAGATGCTTCTGGTCCTCTTGGAGGGTGCATATGGCCTCCAAGGTCCTACACTTGCAGCTTTTGCAGGAGAGAGTTCAGGTCTGCTCAAGCTTTGGGAGGTCACATGAATGTTCATAGAAGGGACAGAGCAAGACTCAAGCAACCCTCAAGCCCTCAAAACCCTCCtcctaattcttcttcttctcatcttatgggtttcctatacccttaTAATAATACTACTTCTTCCACTAACCCTAATAAGTCTCTTCTTGTTGCTTCACCTAATTCTAGTCATAGGAAGAAGCCTTATGATaatcctcctccttcttcttcttctatgatTCCCTTTCCTACTACTACTGTACCACAAGGACACATCATGAAGCCTAATAATTCCCCTCtcttttattcttcttcttcttctaaatcTAATTGGTCAAACTTGGGTGGTGAAGCTGATCATGACAAGATCTCATCAAAGGTGTTGGATTGTGGGTGTGTGAATAATGGAAAAGCTGATGTGGCTTTCAGTTTGAATTTGGTTGTGTGTAGGGCTCACACACCATCACATGTGGAGTTTGAGAcaaaggaggaagaagaagaagaattagaagatgatgatgatgaacaagaacaagaacaagaagATGCTATAATTGGTTGCAAGAAGAGGAGAATTGATATTGAAAGTACTAAAGAAGCTTCATCAATTCTTCAATTTAGCCCTAGCTCCATGGAAGAGCTAGATCTGGAGCTTAGGCTTGGTCACAGCAGCCACAAGATGTTCAAGTTTGAGAATGGAACAAAAACTCCATTTTga 933 0.3473 MDEQGQFWMWTKRKYCMSSSSTKLSNCNNNSYDESSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNPPPNSSSSHLMGFLYPYNNTTSSTNPNKSLLVASPNSSHRKKPYDNPPPSSSSMIPFPTTTVPQGHIMKPNNSPLFYSSSSSKSNWSNLGGEADHDKISSKVLDCGCVNNGKADVAFSLNLVVCRAHTPSHVEFETKEEEEEELEDDDDEQEQEQEDAIIGCKKRRIDIESTKEASSILQFSPSSMEELDLELRLGHSSHKMFKFENGTKTPF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2363 310 SUPERFAMILY beta-beta-alpha zinc fingers 57 86 IPR036236 -
Sto1g2363 310 Coils Coil 231 254 - -
Sto1g2363 310 PANTHER CHAIN A, NMR STRUCTURE OF THE SINGLE QALGGH ZINC FINGER DOMAIN FROM ARABIDOPSIS THALIANA SUPERMAN PROTEIN 8 295 - -
Sto1g2363 310 SMART c2h2final6 60 82 IPR013087 -
Sto1g2363 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Sto1g2363 310 MobiDBLite consensus disorder prediction 230 255 - -
Sto1g2363 310 MobiDBLite consensus disorder prediction 76 153 - -
Sto1g2363 310 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Sto1g2363 310 MobiDBLite consensus disorder prediction 100 145 - -
Sto1g2363 310 MobiDBLite consensus disorder prediction 233 252 - -
Sto1g2363 310 Pfam C2H2-type zinc finger 60 84 - -
Sto1g2363 310 Gene3D Classic Zinc Finger 57 105 - -
Sto1g2363 310 PANTHER OS07G0101800 PROTEIN 8 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2363 Sto-Chr1 31523238 31524783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2363 1 104 C2H2 Transcription Factor Family AT2G37740 55.769 1.22e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto1g2363 zf-C2H2_6 5.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2363 - - pvy:116134396 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2363 1 31523238 31524783 Sto1g2363 1 31523238 31524783 ECH