Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2360 atgaagaatctGATACTGACTCACTTGTTCTTTCttctcctctctttctcttctccattACTCATCATTGCTTCCTTCACTCACTGCCCAAACTGTGGTCCCACCCACGTCCCCTACCCTCTGAGCACCCACCCCCATTGCGGACACCCCTCCTACAAGCTCCGTTGCGAGGGACACTCCCTCTGGTTCGACACCCTCAACTCCTCCTCCTACCTCGTCACCTCCATCAACCCCAAAACGCAGCGTTTCGTGGTCCGACCCCCCGGTCTCTCCTCCAAACGAACCTGTGTCTCCTCCGACTTCCAAGCCCAAGGCATGTGGCTCGACCCAAACGCACCCTTTAACATCACCTCATCCAACACCATCATCCTCATGAACTGCTCCCAACAAGTCCTCTCCCTCTTGTGGAACTGCTCTTCTTCCAGCATTTGTCATCACTACCTTCAGTCCAATGCCGGCGCTGCCACTGCATGTGGCGCTGGTGGAACCGCCTTATGCTGCGCAATCAAGACCGGGGGTTCAACCACCGCGTATCGGATCAGGGTGAGGAAGGAGCGGTGCGCCGCCTATGTGAGTTTTCCCAATTTGGATGATTATTCGACGCCGGTGAGAGAGTGGCCGGAGCCCGGGGTGGAGATTGAGTGGGTGCTTCCGGAGGAGCCGGCATGTGATGCGGCTGTGGATTGTCGGGGTTTGGCAAACTCGGCGTGCTTGACGGCTCCGGCGGTCGGAGGTGGCGGAGAGATCAAGTGTGAAGATGGAAGGGGATGTAAGCATCGTAAGAAGAAAATTCAACTTATTGGAGGTTTGGCATTTGCCGGGGCTGCCCTACTCGCTGGAACCCTAATCGTAGCACTAATTTTGCACCGCCGCCGCCGCAACACTGAGCGGAGTCTAGGAGCGGAGCTAAGCTTAAGCAGGGCACGTGACATCCTTGAGGGCGACAACAGCAGCGGAAAATCCGCGAAGATCTTCACCATCAAGGAGATGACGAGAGCCACATCTAAATTCTCGAAGCACAACCTCGTGGGCTCCGGCGGCTTCGGCGAGGTCTTCAAGGGTACCCTGGACGACGGCACCCTAACGGCCATCAAACGCGCCAAGCCGGGCAACACACGCGCCGCCGACCAGCTCCTGAACGAGGTCCGAATCCTCTGCCAGCTCAACCACCGCAGCCTCGTACGGCTCCTAGGTTGCTGCATCGACCTCCCCAACGAACCCCTCCTCGTCTACGAGTTCGTCCCAAACGGCACACTCTTCGACCACCTGCACAACGCCAGCGCGTGGGCCCCACTCTCGTGGCATCGACGGCTGAAAATCGCCCATCAAACGGCGGAGGGGCTCTCATACCTTCACAACTCAGCTATACCTAGAATCTTCCACAGGGACATAAAGAGTAGCAACATTTTACTAGACGACAACCTTGACGCGAAGGTTTCGGATTTCGGGCTCTCGAGGTTGGCCATAAGCGAAGCAAGTCACATCACCACGTGTGCGCAAGGGACATTAGGGTACCTGGATCCGGAGTACTACATAAATTTTCAGCTTACGGATAAGAGTGACGTGTACAGTTTTGGGGTGGTATTGTTGGAGATTTTGACATCGAAGAAGgctttggattttgggagggaAGAGGAGGATGTGAATTTGGTGGTGTTTGTGAAGAGGGCTATGAAACATGGGAGGTTGATGGATGTGGTTGATCGGACGGTCAGGATTGGGGCTGGCAGGGTGGAGTTGGAGAGTATGAAGGCATTGGGGAGTCTTGCGGCTTCGTGTTTGGATGAACAAAGACAGAAAAGGCCTTCCATCAAAGATGTTGCCGATGAGATTCACTACATTCTTCGCATGCTTTCTGATCGATAA 1866 0.5364 MKNLILTHLFFLLLSFSSPLLIIASFTHCPNCGPTHVPYPLSTHPHCGHPSYKLRCEGHSLWFDTLNSSSYLVTSINPKTQRFVVRPPGLSSKRTCVSSDFQAQGMWLDPNAPFNITSSNTIILMNCSQQVLSLLWNCSSSSICHHYLQSNAGAATACGAGGTALCCAIKTGGSTTAYRIRVRKERCAAYVSFPNLDDYSTPVREWPEPGVEIEWVLPEEPACDAAVDCRGLANSACLTAPAVGGGGEIKCEDGRGCKHRKKKIQLIGGLAFAGAALLAGTLIVALILHRRRRNTERSLGAELSLSRARDILEGDNSSGKSAKIFTIKEMTRATSKFSKHNLVGSGGFGEVFKGTLDDGTLTAIKRAKPGNTRAADQLLNEVRILCQLNHRSLVRLLGCCIDLPNEPLLVYEFVPNGTLFDHLHNASAWAPLSWHRRLKIAHQTAEGLSYLHNSAIPRIFHRDIKSSNILLDDNLDAKVSDFGLSRLAISEASHITTCAQGTLGYLDPEYYINFQLTDKSDVYSFGVVLLEILTSKKALDFGREEEDVNLVVFVKRAMKHGRLMDVVDRTVRIGAGRVELESMKALGSLAASCLDEQRQKRPSIKDVADEIHYILRMLSDR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2360 621 Gene3D Transferase(Phosphotransferase) domain 1 414 620 - -
Sto1g2360 621 Gene3D Phosphorylase Kinase; domain 1 310 413 - -
Sto1g2360 621 Pfam Protein tyrosine and serine/threonine kinase 340 610 IPR001245 GO:0004672|GO:0006468
Sto1g2360 621 CDD STKc_IRAK 343 611 - -
Sto1g2360 621 Pfam Wall-associated receptor kinase galacturonan-binding 29 85 IPR025287 GO:0030247
Sto1g2360 621 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 617 IPR045274 GO:0007166
Sto1g2360 621 SUPERFAMILY Protein kinase-like (PK-like) 320 614 IPR011009 -
Sto1g2360 621 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Sto1g2360 621 SMART serkin_6 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto1g2360 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Sto1g2360 621 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 28 617 - -
Sto1g2360 621 ProSiteProfiles Protein kinase domain profile. 337 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2360 Sto-Chr1 31488707 31492753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2360 23 621 Receptor kinase-like Gene Family AT5G02070 52.006 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sto1g2360 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2360 - - gmx:100775709 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2360 1 31488707 31492753 Sto1g2360 1 31488707 31492753 ECH