Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2348 TTGCTCATCAATATCACACAGGTGTTCAGGAGGTACCGACAGTACTATCAACAGATGCAGGCAGTGATAACTTCATTTGAGTATGTTGCCGGCCTTGGTAATGCGGCTCCATATGCCTGCTTGGCTATAAAGTCAATGTCCAAACATTTTAGATGCCTGAAGAATGCAATTACTGACCAGCTCCATTTCACTAAAAATGCTCATTTGAACATCATAAGCAACAGCAAAGATGAATCTCCTCTTGGCAACAGTGATAGGGCCCCTTATAACCAAGTGCCGGTTCGAAACCCAGAATTTCTCAATCATCAACCGGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGGGCTGTAACCGTCCTTAAGGCGTGGTTGTTTGAGCACTTTCTTCACCCTTATCCAACTGATTCGGATAAGCAAATGCTGGCTAAACAAACTGGTCTATCTCGCAGTCAGGTATCAAATTGGTTTATAAATGCCAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACACATGCTCGAAACGCGACAAGCTCAGAAAAATCAGCAGAGGGAAGAACATCACAGGAACCGAACGAGCGAGAATCCTTCTACCTCTACGAACAAGTTTCTGGATGTCCCTTACAAACGCACAAGAAATGAACTTTCAAATATACCTGTGAGGAGTCAGGAACAACTAAATCTGCCCTATACTACAAGCAATCAGAATCATCCTGTAGGTGTTGGAGTCACCATGGTGGCTGCAGGAAATAGTAATGGGGTGTCACTGACACTAGGTCTTCATCAAAATCATGGGATAGGGATATCTGAATCCTTTCCCATGAATCCTGCTCATCGTTTTGGTGTTCCCCTCGAACCCAGTAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAGAATCAGCATTTTGGAAGAGATGTTATGGGAGGGCAACTATTACGTGACTTTGTGGgatga 960 0.4385 LLINITQVFRRYRQYYQQMQAVITSFEYVAGLGNAAPYACLAIKSMSKHFRCLKNAITDQLHFTKNAHLNIISNSKDESPLGNSDRAPYNQVPVRNPEFLNHQPVWRPQRGLPERAVTVLKAWLFEHFLHPYPTDSDKQMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNQQREEHHRNRTSENPSTSTNKFLDVPYKRTRNELSNIPVRSQEQLNLPYTTSNQNHPVGVGVTMVAAGNSNGVSLTLGLHQNHGIGISESFPMNPAHRFGVPLEPSNEGYVMSGFESQNQHFGRDVMGGQLLRDFVG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2348 319 CDD homeodomain 106 167 IPR001356 GO:0003677
Sto1g2348 319 ProSiteProfiles 'Homeobox' domain profile. 103 166 IPR001356 GO:0003677
Sto1g2348 319 SMART prehox3 3 59 IPR006563 -
Sto1g2348 319 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 287 - -
Sto1g2348 319 MobiDBLite consensus disorder prediction 178 194 - -
Sto1g2348 319 Pfam Associated with HOX 6 58 IPR006563 -
Sto1g2348 319 MobiDBLite consensus disorder prediction 178 204 - -
Sto1g2348 319 Gene3D - 109 171 - -
Sto1g2348 319 SUPERFAMILY Homeodomain-like 108 173 IPR009057 -
Sto1g2348 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 287 - -
Sto1g2348 319 SMART HOX_1 106 170 IPR001356 GO:0003677
Sto1g2348 319 Pfam Homeobox KN domain 123 162 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2348 Sto-Chr1 31402940 31404101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2348 1 319 Homeobox Transcription Factor Family AT5G02030 49.573 1.34e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sto1g2348 POX 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2348 - - gmx:100798496 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2348 1 31402940 31404101 Sto1g2348 1 31402940 31404101 ECH