Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2333 ATGTCCCATGTCGATTTGGAGCAAGGAGATCACCGCCGGTCGGTGGCGGGAAGTGACGTCAGCGCCGACGACGGGAGCTTGTGCTTCACCGACGCCGATGATGGGTCTTgctattctcatttctattcaACGAACGGTGGCTCGTCGTACGATGACTATAGCTTCGCTTGCATTTCTGATTCCGAGGTTAGAGGTGTTGTTCATGATTCTGGGAGGGCTTCTTCTGTGACTGACTGTTCAGTGGAAATTGAGAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTAGAGAGGGATTGTAGGATTTGTCACTTGGGTTTGGAGAGTGATGGTCATGGAGAGTCAGGGATTCCTATTGAGTTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCTCATAAACACTGTGCTGAGGCCTGGTTCAAGATCAAAGGGAATAGGACCTGTGAAATTTGTCATTCAGTTGCTCGAAATGTCTTTGGAGGAAACGAGGAGTTAACAGAGCATGCAAGTGAAAATAGCAACATTGCTACTCCTGCTGCAGCAGCAACAAGCACATTCTCAACACCAGCTCCTTCTTCTGCTGAAACTCGAAGATTCTGGCATGGCCATCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTACCCTCATCCTAA 699 0.4592 MSHVDLEQGDHRRSVAGSDVSADDGSLCFTDADDGSCYSHFYSTNGGSSYDDYSFACISDSEVRGVVHDSGRASSVTDCSVEIESGVPEIKVHLAKVERDCRICHLGLESDGHGESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVFGGNEELTEHASENSNIATPAAAATSTFSTPAPSSAETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2333 232 PANTHER ZINC FINGER, RING-CH-TYPE 2 231 - -
Sto1g2333 232 SMART ringv_2 100 154 IPR011016 GO:0008270
Sto1g2333 232 PANTHER OS01G0850200 PROTEIN 2 231 - -
Sto1g2333 232 CDD RING_CH-C4HC3_MARCH 101 154 - -
Sto1g2333 232 SUPERFAMILY RING/U-box 98 157 - -
Sto1g2333 232 MobiDBLite consensus disorder prediction 1 21 - -
Sto1g2333 232 Pfam RING-variant domain 101 153 IPR011016 GO:0008270
Sto1g2333 232 MobiDBLite consensus disorder prediction 1 18 - -
Sto1g2333 232 ProSiteProfiles Zinc finger RING-CH-type profile. 93 160 IPR011016 GO:0008270
Sto1g2333 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 161 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2333 Sto-Chr1 31236888 31239809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2333 66 232 C3H Transcription Factor Family AT5G05830 59.763 2.86e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2333 - - gmx:100808666 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2333 1 31236888 31239809 Sto1g2333 1 31236888 31239809 ECH