Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2317 ATGCTTCAGATTCGGCTTAGTAAGGTTCCGGCCTCAGAAGGATTACCAGGGGTGAAGTCCTCACCTGTTGAGACTGTCACAGTTACATGTCCTGATCATCTTGTCCTTGCTGATCTTCCTGTGGCAAAGGGCATTGGTTTAGCAACTGCTGCTTCTGTTGTTAAGACTTTGGGCCGTAGATCCCGCCGCCAGCGTGGTGAGTGTGTCCACTTCTGTGTTCGTTGTGATTTCCCAATTGCAATCTATGGACGACTGAGCCCTTGTGAGCATGCCTTCTGTCTTGAATGTGCTAGAAGTGATTCTATGTGCTATCTGTGA 318 0.4874 MLQIRLSKVPASEGLPGVKSSPVETVTVTCPDHLVLADLPVAKGIGLATAASVVKTLGRRSRRQRGECVHFCVRCDFPIAIYGRLSPCEHAFCLECARSDSMCYL 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2317 105 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Sto1g2317 105 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 105 IPR040383 GO:0016567|GO:0061630
Sto1g2317 105 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 105 - -
Sto1g2317 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2317 Sto-Chr1 31088791 31089603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2317 1 105 C2H2 Transcription Factor Family AT5G01160 74.286 2.00e-51 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2317 K15685 - lja:Lj3g3v1403940.1 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2317 1 31088791 31089603 Sto1g2317 1 31088791 31089603 ECH