Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2301 ATGAACAGGGGAATTGAAGTTCTCTCCCCGGCTTTCTCTCCTGCCTCCTATCTCCAGAATTCTAATTGGTTGTTCCAGGAAAGCAAAGCAGCCAAATGGACACCCGAAGAGAACAAACGCTTTGAGAACGCTTTGGCTCTGTTTGATAAGGACACACCAGATCGTTGGCTGAAGGTGGCAGCCATGCTTCCAGGCAAGACTGTGGATGATGTGATCAAACAGTACAGAGAACTGGAAGAAGATGTGAGTGTCATTGAGGCAGGGTTGTACCCAATTCCTGGGTATAGTAATAGTTCATTCACATTGGAATGGGTCAATAGCCATGGCTTTGATGGATTCAAGCAATTTTATACTTCTACTGGGAAAAGAGGCACCCCCACTAGGCCATCTGAgcaggaaagaaagaaaggagttCCATGGACTGAAGAGGAGCATAGGCAATTTCTGATGGGTCTGAAGAAATACGGAAAAGGGGACTGGAGAAACATCTCCCGTAATTTTGTGACCACGAGGACGCCTACTCAGGTTGCGAGCCATGCTCAGAAGTACTTCATCAGGCAGCTTACAGGAGGGAAAGATAAGAGGAGATCCAGTATCCATGATATCACAATGGTCAATCTCCCTGAAACAAAACCTCCTCCATCAGACAGTATCAGATCAGCTTCATCAAATCATTCTATGAAGGTTGCGAATCCGCCGCAGCAGAATCAGAAATTATCCGGCATGGTTAAACAGGAATATGACATGCCAATGGTGTTCAATCCCACAAATGGGAACATGTTCTTGGCTCCTATTTATGGGATTTCTTCCTATGGATCAAAACCACAGGAACAGTGTTTACTCAGAAGTAATCTCCATGGACGTGACCTTGGACCTTATGATACTATTCTCCAAATGCAATCAATGCAGTATCAGTGA 918 0.4401 MNRGIEVLSPAFSPASYLQNSNWLFQESKAAKWTPEENKRFENALALFDKDTPDRWLKVAAMLPGKTVDDVIKQYRELEEDVSVIEAGLYPIPGYSNSSFTLEWVNSHGFDGFKQFYTSTGKRGTPTRPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPETKPPPSDSIRSASSNHSMKVANPPQQNQKLSGMVKQEYDMPMVFNPTNGNMFLAPIYGISSYGSKPQEQCLLRSNLHGRDLGPYDTILQMQSMQYQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2301 305 MobiDBLite consensus disorder prediction 118 140 - -
Sto1g2301 305 PANTHER TRANSCRIPTION FACTOR DIVARICATA 1 248 - -
Sto1g2301 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 248 IPR043363 -
Sto1g2301 305 SMART sant 136 186 IPR001005 -
Sto1g2301 305 SMART sant 29 81 IPR001005 -
Sto1g2301 305 Gene3D - 138 188 - -
Sto1g2301 305 MobiDBLite consensus disorder prediction 213 236 - -
Sto1g2301 305 CDD SANT 32 78 IPR001005 -
Sto1g2301 305 SUPERFAMILY Homeodomain-like 32 86 IPR009057 -
Sto1g2301 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Sto1g2301 305 MobiDBLite consensus disorder prediction 206 236 - -
Sto1g2301 305 CDD SANT 139 184 IPR001005 -
Sto1g2301 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Sto1g2301 305 Pfam Myb-like DNA-binding domain 32 77 IPR001005 -
Sto1g2301 305 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Sto1g2301 305 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
Sto1g2301 305 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Sto1g2301 305 ProSiteProfiles Myb-like domain profile. 25 79 IPR001005 -
Sto1g2301 305 Gene3D - 25 92 - -
Sto1g2301 305 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2301 Sto-Chr1 30991622 30992851 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto1g2301 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2301 - - zju:107407869 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2301 1 30991622 30992851 Sto5g1550 5 10778314 10779622 ECH
Sto1g2301 1 30991622 30992851 Sto1g2301 1 30991622 30992851 ECH
Sto1g2301 1 30991622 30992851 Sto9g2132 9 25087588 25090670 ECH
Sto1g2301 1 30991622 30992851 Sto5g4311 5 51869099 51870552 ECH