Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2300 ATGCCTTCATCTTCCACTACCATCATCTCCAAATGCACTATCTACCCTCATCAAAAATCCTCCATCAAAACCCTCAAGCTCTCTGTTTCTGACCTCCCTATGCTCTCCTGCCATTACATTCAGAAAGGAGTCTTACTCCCACTCCCACCTTACTCCTTCGACGACCTCATCCTTTTTCTCAAGCACTCCCTTTCCATAGCACTATCCCATTTCCCCGCCCTCGCCGGCCGCTTCATCACCGACGATGATGGCTACGTCCACATCCTCTGCAACGACGCCGGCGTCGATTTCATCCACGCCAAGGCCAAACACCTTGCTATCACCACCATCTACAATCCCGAACTTGTCGACGTCCCTAATTGCTTCAAGGAATTCTTCGCCTACGACAACACTATTTCCTACTCCGGCCACAACAACCCGCTCTCCGCCGTCCAGGTCACCGAGCTCGCCGACGGCGTTTTCATCGGATGCACTGTGAACCACGCCGTCACCGATGGGACTTCCTTCTGGCACTTCTTCAACACGTTCGCTGAGATCTGCAAGGGCGTGAAGAAGATAACGAAATCGCCGGATTTCACGCGCGACACCGTTTTCAACTCCCCCGCCGTGCTCAGAGTCCCCGCTGGCGGTCCGAAGATCACCTTCGACGCCGACGAGCCTCTCCGTGAGAGAGTCTTCCACTTCAGCAGAGAGTCGATTCAGAGGCTGAAGCTCAGAGCCAACAATGGCGGTCTTAACGGTTTCGCGGATTCCACGGAGGTATTGGGAAAGCAAGTAAACGACAGTTGGAAAACTGTTAACGGTAACGGCGTTTCTAACGCTAGGACAGATGAGATCTCGTCGTTCCAATCGTTATCTGCTCAGCTGTGGCGTTCGGTGACACGTGCGAGGAAGCTGGACTCCtccaaaacgtcgacgtttcgcATGGCGGTGAACTGCCGCCACCGATTGAATCCGAAGATGGACTCTCATTACTTCGGCAACGCGATTCAGAGCATCCCGACCATCGCCGAAGCCGGCGAGATCCTGTCACGCGATCTGCGGTGGTGTGCGGATCTGCTCCACAAAAACGTCGTCGCACACGACGACGCCATGGTTCGCCGCGGCGTGGAGGATTGGGAGAAGGCTCCGAGGCTGTTTCCGTTGGGGAACTTCGACGGCGCGTCGATCACCATGGGAAGCTCACCGCGTTTTCCGATGTACAACAACGACTTCGGGTGGGGGCGGCCGTTGGCGGTGAGAAGCGGTAAGGCGAACAAGTTCGACGGGAAGATCTCGGCGTTTCCGGGAAGAGAAGGAAACGGAAGCGTGGATCTGGAGGTCGTTTTGGCGCCGGAGACAATGGCAGGGCTGGAAAACGACATGGAGTTTATGCAGTACGTAACGCCAATAGTGTGA 1398 0.5458 MPSSSTTIISKCTIYPHQKSSIKTLKLSVSDLPMLSCHYIQKGVLLPLPPYSFDDLILFLKHSLSIALSHFPALAGRFITDDDGYVHILCNDAGVDFIHAKAKHLAITTIYNPELVDVPNCFKEFFAYDNTISYSGHNNPLSAVQVTELADGVFIGCTVNHAVTDGTSFWHFFNTFAEICKGVKKITKSPDFTRDTVFNSPAVLRVPAGGPKITFDADEPLRERVFHFSRESIQRLKLRANNGGLNGFADSTEVLGKQVNDSWKTVNGNGVSNARTDEISSFQSLSAQLWRSVTRARKLDSSKTSTFRMAVNCRHRLNPKMDSHYFGNAIQSIPTIAEAGEILSRDLRWCADLLHKNVVAHDDAMVRRGVEDWEKAPRLFPLGNFDGASITMGSSPRFPMYNNDFGWGRPLAVRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDMEFMQYVTPIV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2300 465 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 462 - -
Sto1g2300 465 SUPERFAMILY CoA-dependent acyltransferases 60 182 - -
Sto1g2300 465 Gene3D - 6 207 IPR023213 -
Sto1g2300 465 Gene3D - 219 458 IPR023213 -
Sto1g2300 465 Pfam Transferase family 6 458 - -
Sto1g2300 465 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 5 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2300 Sto-Chr1 30962132 30963562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2300 60 453 Monolignol Biosynthesis Gene Families AT5G48930 26.585 6.78e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2300 - - gmx:100804321 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2300 1 30962132 30963562 Sto1g2300 1 30962132 30963562 ECH