Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2281 ATGGGAACAGGAAGCTTTTTATGGAATTTTACAAAGAAATTTATCACATTTGGCGTCATCACTGTGACAGTGTCTGATCGTTATGTGACCATTGTTCCAGTTCGTGGTGGCTCTATGTCTCCCACACTTAATCCTAAAACCAGTTCTTCATTTGGAAAAATTTCTGATGACTATGTCTTGGTCGAGAAATTTTGCCTTGAAAAGTATAAGTTCTCCCGCGGTGATGTGGTGGTCTTCCGAGGTATAATACAGAAGAGAAACTGCTCCCCAATGAATCACAAGGAGACACACATAAAAAGAATAGTTGCATTACCCGAAGAGTGGTTTGGCGCACATCGTAACTATGATGTGCTGAAGATTCCAGAAGGACATTGCTGGGTCCAGGGAGACAATGCAGCTTCAAGCATGGATTCAAACTCATTTGGACCTATTCCTTTGGGTCTAGTTCGAGGAAGGGTGACCCACGTTGTATGGCCTCCTCAAAGAATAGGTGCAGTAAAGAAGACTTCGCCAGAaggattttcttcttaa 531 0.4181 MGTGSFLWNFTKKFITFGVITVTVSDRYVTIVPVRGGSMSPTLNPKTSSSFGKISDDYVLVEKFCLEKYKFSRGDVVVFRGIIQKRNCSPMNHKETHIKRIVALPEEWFGAHRNYDVLKIPEGHCWVQGDNAASSMDSNSFGPIPLGLVRGRVTHVVWPPQRIGAVKKTSPEGFSS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2281 176 SUPERFAMILY LexA/Signal peptidase 29 166 IPR036286 -
Sto1g2281 176 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 172 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Sto1g2281 176 Gene3D Umud Fragment, subunit A 26 170 - -
Sto1g2281 176 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto1g2281 176 PRINTS Bacterial leader peptidase 1 (S26A) family signature 97 109 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto1g2281 176 PRINTS Bacterial leader peptidase 1 (S26A) family signature 120 139 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto1g2281 176 Pfam Signal peptidase, peptidase S26 9 106 IPR019533 GO:0004252|GO:0006465
Sto1g2281 176 Pfam Signal peptidase, peptidase S26 117 158 IPR019533 GO:0004252|GO:0006465
Sto1g2281 176 CDD S26_SPase_I 31 153 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2281 Sto-Chr1 30782388 30785094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2281 39 169 MADS-box Gene Family AT1G29960 35.766 1.59e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2281 K09648 - gmx:100527429 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2281 1 30782388 30785094 Sto1g2281 1 30782388 30785094 ECH