Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2278 ATGCGCAAGTCTTTCAAGGATTCGCTTAAGGCTCTTGAAGCTGATATCCAGTTCGCCAACACACTAGCTTCTGATTATCCAAGAGACTATGATGGTGCCTGCATCCAGATGAGATTGTCATACAGCCCAGCagctcaattttttctttttctggttCAGTGGACTGATTGTAACCTTGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGCATACGAGGATGGTAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGTGTAATCTTTCCCTCCTTATTGCAACTCCACAGAGGAATCACTGATGTAGAAGATAGGAAACAAAAAGATATATGTGCTACCAAGTATAAGCCAAAACCTGTAATAAGCAAAGGAAAGCTCTCGGAAATTGATGTAGAGAGAGAAGAGGAATGTGGTATTTGCATGGAGATCAACAGCAAGATCGTATTACCCAATTGCAATCACTCAATGTGTATGAAATGCTACCGAGACTGGCATGCACGATCTCAATCTTGCCCTTTCTGCCGGGACAGCCTCAAAAGAGTTAACTCTGGTGACCTTTGGATCTACATGAGCAACAATGAGATAGATGACTTGGCTGCAATCACCAAGGATAATTTAAAGAGGTTATTTATGTACATTGAAAAACTACCTCTTATTGTTCCAGATCCTATATTCGTGTCTTATCCTCTTCGCTGGTGA 726 0.4022 MRKSFKDSLKALEADIQFANTLASDYPRDYDGACIQMRLSYSPAAQFFLFLVQWTDCNLAGALGLLRILIYKAYEDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEDRKQKDICATKYKPKPVISKGKLSEIDVEREEECGICMEINSKIVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWIYMSNNEIDDLAAITKDNLKRLFMYIEKLPLIVPDPIFVSYPLRW 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2278 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 193 IPR013083 -
Sto1g2278 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Sto1g2278 241 PANTHER RING FINGER PROTEIN 41, 151 1 229 - -
Sto1g2278 241 SMART ring_2 146 183 IPR001841 -
Sto1g2278 241 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 229 - -
Sto1g2278 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Sto1g2278 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Sto1g2278 241 SUPERFAMILY RING/U-box 135 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2278 Sto-Chr1 30768449 30771831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2278 90 188 C3H Transcription Factor Family AT5G01960 28.846 6.09e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2278 K25840 - pop:7466068 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0518 6 5621575 5624866 Sto1g2278 1 30768449 30771831 CCT
Sto1g2278 1 30768449 30771831 Sto1g2278 1 30768449 30771831 ECH