Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2272 ATGGCTTCTGCTCAATCTTACAACGAAGCAAGGCTTCTAGAGAGCGGACACCGCAAGGAATCGTGCAAGGAGATCATGAGGCAAGGCCGTTCCGCTCGCAAAATGTCCTCTACCTCCTTGCGCAAGAAATCCGACCTCAAGATTGTTTCCAAGGTCCGATGTGCGCTGCTCAGGAATTTGCTGGCCAATCTGCAAGAGGTCATTCTCGGCACCAAGCTTTCGATCCTTTTCCCGGCGATTCCGCTCGCCATTGTTGCTGATTGCTATGGCTTCTCGCGACCATGGGTGTTTGCGTTGAGCTTACTTGGACTTACACCACTTGCTGAACGAGTCAGCTTCTTGACAGAACAAGTTGCTTATTACACAGGCCCCACAGTTGGAGGCCTCCTGAATGCGACATGCGGAAATGTTACAGAGCTCGTAATAGCAATATTTGCTCTTAGCGACAATAAAATAGCAGTGGTCAAGTATTCTCTCTTAGGTTCTATCCTTTCAAACCTTCTTCTGGTTCTTGGAACCTCTCTCTTCTGTGGCGGCATCGCAAACATTGGACAAGAACAAAAATATGACAGAaGACAAGCGGATGTGAACTCACTTATGCTGCTTCTGGCATTGTTGTGCCACTTGCTGCCAATGCTATTCAGATATTCTTCTGCCTCGGCTGCTCTCACTGCAGATCCATCTCTCCAATTCTCAAGAGCTGGAAGCATTGTGATGTTGATAGCATATTTTGCTTACCTTGTCTTTCAACTATGGACACATCGTCAATTATTTGAGGCCCAGGATGACGACGACGATAGCGACAGCGTCTCAGAAGAAACGGCAGTGATAGGGTTCTGGAGTGGATTTGCATGGCTGGTTGGAATGACTGTGTTCATAGCTGTGTTGTCTGAATATGTGGTGGCGACAATAGAGGATGCATCAGATTCATGGGGTCTGTCTGTCAGCTTCCTCAGCATAATTTTGCTACCAATAGTGGGAAATGCAGCTGAACATGCAGGAGCTATAATATTTGCTTTCAAGAACAAGCTGGATATCTCATTGGGTGTTGCTCTGGGCTCTGCTACTCAAATTGGCTTGTTTGTGGTTCCCCTTTGTGTCATTATTTCTTGGATAATGGGCCTCAAAATGGACCTTAACTTCAACCTCCTTGAAACTGGTTCACTTGCTTTGGCCATAATAGCCACAGCCTTCACTTTACAGGATGGAACTTCTCATTACATGAAAGGCTTTGTTCTCCTGCTCTTATACATTGTTATTGGGGCATGCTTTTTTGTACAGACATCACCATTAAACCAAGTTCATATCACTAACATGGTGCCTCAATCAGCAACTGATGCAGTTTTCAGAGCTTAA 1356 0.4572 MASAQSYNEARLLESGHRKESCKEIMRQGRSARKMSSTSLRKKSDLKIVSKVRCALLRNLLANLQEVILGTKLSILFPAIPLAIVADCYGFSRPWVFALSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELVIAIFALSDNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANIGQEQKYDRRQADVNSLMLLLALLCHLLPMLFRYSSASAALTADPSLQFSRAGSIVMLIAYFAYLVFQLWTHRQLFEAQDDDDDSDSVSEETAVIGFWSGFAWLVGMTVFIAVLSEYVVATIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGLFVVPLCVIISWIMGLKMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKGFVLLLLYIVIGACFFVQTSPLNQVHITNMVPQSATDAVFRA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2272 451 TIGRFAM caca2: calcium/proton exchanger 59 425 - -
Sto1g2272 451 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Sto1g2272 451 Pfam Sodium/calcium exchanger protein 282 420 IPR004837 GO:0016021|GO:0055085
Sto1g2272 451 Pfam Sodium/calcium exchanger protein 94 252 IPR004837 GO:0016021|GO:0055085
Sto1g2272 451 Gene3D - 124 272 IPR044880 -
Sto1g2272 451 Gene3D - 273 425 IPR044880 -
Sto1g2272 451 TIGRFAM cax: calcium/proton exchanger 78 425 IPR004798 GO:0006816|GO:0015369
Sto1g2272 451 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 2 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2272 Sto-Chr1 30722746 30727091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2272 19 434 Antiporters AT2G38170 72.143 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2272 K07300 - jre:108995179 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0514 6 5584511 5588454 Sto1g2272 1 30722746 30727091 CCT
Sto1g2272 1 30722746 30727091 Sto1g2272 1 30722746 30727091 ECH