Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2269 ATGGCCGAGCCACATTCTTCATCCgctccttcttcttccaccgCCAATCAGGACGCTTCCGGAGCTGCGTCGTCGTCGTCTGCGAGCTCTTCACGAGTCCGCCGCGAGGAGGAAAGTCGAAGAGACCAACCTAACCTAGGGCCGCCGAGTTCGAGCGTCGTCTTTCGAGGAATCGTTCGCGGTGTCGTCGATAATGCATCGCCGGTGGTTAGGGATGATGCGTGGTCCTGCCTTGTCGTTCTTTTCACCTTTTGGTTTTTTGTGTCGTTGACTATGATACTGGGAGTTTATGGGTCTACGAACCTACTGATTGCTCCTTATTCGTCCATTCTTCTCCAACCTAGCCCTTTATTCGTGCAATCTTTACAGgTAGAAAACTTAGAGTCAAAGCCAGGAATCGTGCTCTATGGTACATATGGAACCCCCGCTCTGGATGCTTTTATAGTTTGGACAGAAACTCATAATGTAACAATTTCATCGGACTCGCATGAGGCAAGTACTATAGAATGGAAATATTACCTGAATACAGGGTCACAAGTGAATATTTCATATAGCCTGAGCCCTGAGAGTTCCTCTATTTACCTTGTAATTGCAGAAGGGAATGAAGGCCTCTCCCAGTGGCTGGAGGAACCAACATATCCTAATAGCTCTCTCTCATGGAACAACATCCATGGAACTGGTATGATTACACAGGACATATTCAGCTCATCGAGTTATTATGTGGCAGTAGGTAATCTGAATGAGGAGGTGGAGGTTGAAATGACCATCAGAGTAAGGGCCGCTTGGTATAATACGACTGACGCATACTACAAATGTACTTTGAATAGTAAACCATGCAGTATGAGTGTGTTCTTTCAGCAAAATGCAGCTGTCAATACATCAAGTAATGAGTGGTACGTCAAACTGTCCTATGGACCAAGATGGGTCACATATATTTTTGGCATGGGTGGAATGACTGTGGCTATGTTTTTCGTCTTTAACTACTTGAACAAGCTCCATTTTGCTCCTGATGATAGAGCAAGAGGTAGTGAGGAAACAGCACCTCAGAGAGCTCCCTTGCTTTCGTACAAAGATGACGATCTTTCAAGTTGGGGTTCATCATATGAATCCTTGCCACATGATGAGGAGGATCTTGATTACACAGGGAGTACCATTGATGGGAAGTCTTTAGGTGATGGTGAAACCAGTAATAATACCCGGCGTCTTTGTGCAATTTGCTTTGATGCTCCAAGGGACTGCTTCTTTCTTCCATGCGGGCACTGTGTGGCTTGCTTTGAATGTGCAACTAGGATAGCAGAGGCAGAGGGTACTTGCCCTGTATGTAATAGGAGAATGAAGAAGGTGAGGAAGATCTTTACTGTTTAA 1365 0.4469 MAEPHSSSAPSSSTANQDASGAASSSSASSSRVRREEESRRDQPNLGPPSSSVVFRGIVRGVVDNASPVVRDDAWSCLVVLFTFWFFVSLTMILGVYGSTNLLIAPYSSILLQPSPLFVQSLQVENLESKPGIVLYGTYGTPALDAFIVWTETHNVTISSDSHEASTIEWKYYLNTGSQVNISYSLSPESSSIYLVIAEGNEGLSQWLEEPTYPNSSLSWNNIHGTGMITQDIFSSSSYYVAVGNLNEEVEVEMTIRVRAAWYNTTDAYYKCTLNSKPCSMSVFFQQNAAVNTSSNEWYVKLSYGPRWVTYIFGMGGMTVAMFFVFNYLNKLHFAPDDRARGSEETAPQRAPLLSYKDDDLSSWGSSYESLPHDEEDLDYTGSTIDGKSLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECATRIAEAEGTCPVCNRRMKKVRKIFTV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2269 454 MobiDBLite consensus disorder prediction 1 30 - -
Sto1g2269 454 SUPERFAMILY RING/U-box 402 448 - -
Sto1g2269 454 SMART ring_2 403 441 IPR001841 -
Sto1g2269 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 454 IPR013083 -
Sto1g2269 454 ProSiteProfiles Zinc finger RING-type profile. 403 442 IPR001841 -
Sto1g2269 454 Pfam Domain of unknown function (DUF4792) 134 204 IPR032008 -
Sto1g2269 454 MobiDBLite consensus disorder prediction 369 395 - -
Sto1g2269 454 MobiDBLite consensus disorder prediction 1 49 - -
Sto1g2269 454 Pfam Domain of unknown function (DUF4793) 228 325 IPR032010 -
Sto1g2269 454 PANTHER OS05G0521000 PROTEIN 1 454 IPR044586 GO:0004842
Sto1g2269 454 Pfam Zinc finger, C3HC4 type (RING finger) 400 448 - -
Sto1g2269 454 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2269 Sto-Chr1 30683289 30687625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2269 382 451 C3H Transcription Factor Family AT3G06140 31.429 1.71e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2269 - - jre:108994934 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2269 1 30683289 30687625 Sto1g2269 1 30683289 30687625 ECH