Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2265 ATGGAAATGTCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCTGGAGTCGTTCGTGCTTTGACTCAAGATGTCGACGAATTTTACGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTTTATGGACACCCAAATGAGTCCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTTCCCGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGTGATTCATGGTTGCTTTCTGTGGCATTTTATCTTGGAGCCCGTCTTAACCGCAACGAAAGGAAACGGCTATTTAGCTTAATCAATGATCTTCCCACTGTTTTTGAAGTTGTGACTGAGAAGAAGCCAATAAAGGACAAGGCCACTGTGGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGGTTGGTGTCTTGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCCGATGAAGGTTATGAAGACGACGACGACGAGCATAGCGAAACACTTTGTGGTAGCTGCAGCGGAAACTACAATGCAGATGAATTTTGGATTGGGTGTGATATCTGCGAAAGGTGGTTCCACGGCAAATGTGTGAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCTTCATGCAGCATGAGGCGAGGCAGGCCTTAG 732 0.4795 MEMSSSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTEKKPIKDKATVDSGSKSRGSTKVGVLRSSDGQVKSNPKFADEGYEDDDDEHSETLCGSCSGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2265 243 MobiDBLite consensus disorder prediction 141 182 - -
Sto1g2265 243 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Sto1g2265 243 ProSitePatterns Zinc finger PHD-type signature. 190 236 IPR019786 -
Sto1g2265 243 ProSiteProfiles Zinc finger PHD-type profile. 187 239 IPR019787 -
Sto1g2265 243 MobiDBLite consensus disorder prediction 148 169 - -
Sto1g2265 243 SUPERFAMILY FYVE/PHD zinc finger 178 241 IPR011011 -
Sto1g2265 243 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 242 - -
Sto1g2265 243 Pfam PHD-finger 190 237 IPR019787 -
Sto1g2265 243 CDD PHD_AL_plant 189 239 IPR044104 -
Sto1g2265 243 PANTHER CPG BINDING PROTEIN 3 242 IPR045104 GO:0006355|GO:0042393
Sto1g2265 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 237 IPR013083 -
Sto1g2265 243 SMART PHD_3 189 237 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2265 Sto-Chr1 30655240 30658583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2265 4 242 Alfin-like Transcription Factor Family AT5G05610 76.667 2.19e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sto1g2265 Alfin 2.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2265 - - gmx:100779170 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0505 6 5511780 5514428 Sto1g2265 1 30655240 30658583 CCT
Sto1g2265 1 30655240 30658583 Sto1g2265 1 30655240 30658583 ECH